Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0824

Experiment: 4-hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0823 and Psyr_0824 are separated by 39 nucleotidesPsyr_0824 and Psyr_0825 are separated by 107 nucleotides Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348 _0823 Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566 _0824 Psyr_0825: Psyr_0825 - conserved hypothetical protein, at 933,674 to 934,540 _0825 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.577 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.989 kb on - strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.245 kb on - strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.783 kb on + strand, within Psyr_0824at 933.064 kb on + strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.104 kb on - strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.585 kb on + strandat 933.611 kb on - strandat 933.611 kb on - strandat 933.611 kb on - strandat 933.745 kb on + strandat 933.963 kb on + strand, within Psyr_0825at 933.963 kb on + strand, within Psyr_0825at 933.963 kb on + strand, within Psyr_0825at 933.964 kb on - strand, within Psyr_0825at 934.038 kb on + strand, within Psyr_0825at 934.038 kb on + strand, within Psyr_0825at 934.041 kb on + strand, within Psyr_0825at 934.041 kb on + strand, within Psyr_0825at 934.041 kb on + strand, within Psyr_0825at 934.042 kb on - strand, within Psyr_0825at 934.080 kb on + strand, within Psyr_0825at 934.118 kb on + strand, within Psyr_0825at 934.119 kb on - strand, within Psyr_0825at 934.158 kb on + strand, within Psyr_0825at 934.241 kb on - strand, within Psyr_0825at 934.248 kb on + strand, within Psyr_0825at 934.248 kb on + strand, within Psyr_0825at 934.248 kb on + strand, within Psyr_0825at 934.249 kb on - strand, within Psyr_0825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
remove
931,577 + Psyr_0823 0.56 -1.3
931,743 + Psyr_0823 0.65 +0.1
931,743 + Psyr_0823 0.65 +1.5
931,743 + Psyr_0823 0.65 -1.5
931,743 + Psyr_0823 0.65 +1.1
931,743 + Psyr_0823 0.65 +1.1
931,743 + Psyr_0823 0.65 -0.6
931,743 + Psyr_0823 0.65 +0.1
931,743 + Psyr_0823 0.65 -2.5
931,743 + Psyr_0823 0.65 -0.3
931,743 + Psyr_0823 0.65 +2.5
931,744 - Psyr_0823 0.65 +0.5
931,744 - Psyr_0823 0.65 -0.8
931,744 - Psyr_0823 0.65 -1.6
931,744 - Psyr_0823 0.65 -0.1
931,744 - Psyr_0823 0.65 +0.7
931,744 - Psyr_0823 0.65 +2.0
931,744 - Psyr_0823 0.65 +0.3
931,744 - Psyr_0823 0.65 -1.5
931,926 + Psyr_0823 0.76 -1.5
931,926 + Psyr_0823 0.76 -0.4
931,927 - Psyr_0823 0.76 +0.5
931,927 - Psyr_0823 0.76 +0.1
931,927 - Psyr_0823 0.76 -0.7
931,988 + Psyr_0823 0.79 -2.2
931,988 + Psyr_0823 0.79 -1.5
931,989 - Psyr_0823 0.79 -0.5
932,163 + Psyr_0823 0.89 -0.9
932,163 + Psyr_0823 0.89 -0.2
932,163 + Psyr_0823 0.89 +0.5
932,163 + Psyr_0823 0.89 -0.5
932,164 - Psyr_0823 0.89 +2.7
932,164 - Psyr_0823 0.89 +1.6
932,164 - Psyr_0823 0.89 -1.9
932,164 - Psyr_0823 0.89 -1.3
932,245 - -0.3
932,289 + -1.7
932,289 + +1.1
932,289 + -2.2
932,289 + -0.6
932,290 - +0.1
932,290 - +1.2
932,290 - +1.7
932,290 - -0.9
932,783 + Psyr_0824 0.34 -1.8
933,064 + Psyr_0824 0.57 -1.3
933,065 - Psyr_0824 0.57 -2.9
933,065 - Psyr_0824 0.57 -1.9
933,103 + Psyr_0824 0.61 -3.0
933,103 + Psyr_0824 0.61 +0.1
933,103 + Psyr_0824 0.61 +0.1
933,104 - Psyr_0824 0.61 -1.5
933,199 + Psyr_0824 0.69 -1.5
933,199 + Psyr_0824 0.69 -2.9
933,199 + Psyr_0824 0.69 -2.5
933,199 + Psyr_0824 0.69 -3.5
933,200 - Psyr_0824 0.69 -2.9
933,200 - Psyr_0824 0.69 -2.7
933,200 - Psyr_0824 0.69 -2.7
933,200 - Psyr_0824 0.69 -3.3
933,585 + -0.9
933,611 - +0.7
933,611 - -3.5
933,611 - +2.0
933,745 + -0.4
933,963 + Psyr_0825 0.33 -2.2
933,963 + Psyr_0825 0.33 +1.0
933,963 + Psyr_0825 0.33 -0.7
933,964 - Psyr_0825 0.33 +0.6
934,038 + Psyr_0825 0.42 -0.8
934,038 + Psyr_0825 0.42 -1.7
934,041 + Psyr_0825 0.42 +0.1
934,041 + Psyr_0825 0.42 -1.7
934,041 + Psyr_0825 0.42 +0.5
934,042 - Psyr_0825 0.42 +1.1
934,080 + Psyr_0825 0.47 +0.4
934,118 + Psyr_0825 0.51 +0.4
934,119 - Psyr_0825 0.51 +0.5
934,158 + Psyr_0825 0.56 -0.1
934,241 - Psyr_0825 0.65 -1.9
934,248 + Psyr_0825 0.66 -2.9
934,248 + Psyr_0825 0.66 +0.3
934,248 + Psyr_0825 0.66 +0.5
934,249 - Psyr_0825 0.66 +0.4

Or see this region's nucleotide sequence