Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0742

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
844,737	-		Psyr_0740	0.53	-0.4
844,884	+		Psyr_0740	0.89	+0.5
844,884	+		Psyr_0740	0.89	+0.7
844,884	+		Psyr_0740	0.89	-0.0
844,884	+		Psyr_0740	0.89	+2.2
844,884	+		Psyr_0740	0.89	-0.3
844,884	+		Psyr_0740	0.89	+0.8
844,884	+		Psyr_0740	0.89	+2.5
844,884	+		Psyr_0740	0.89	-0.6
844,884	+		Psyr_0740	0.89	+0.7
844,884	+		Psyr_0740	0.89	-0.3
844,884	+		Psyr_0740	0.89	+0.2
844,884	+		Psyr_0740	0.89	-0.2
844,885	-		Psyr_0740	0.89	+0.6
844,885	-		Psyr_0740	0.89	+1.0
844,885	-		Psyr_0740	0.89	+0.8
844,885	-		Psyr_0740	0.89	-0.7
844,885	-		Psyr_0740	0.89	+1.8
844,885	-		Psyr_0740	0.89	-0.4
844,885	-		Psyr_0740	0.89	-0.2
844,902	-				+0.8
844,948	+				+0.7
844,948	+				+0.4
844,948	+				+0.3
844,948	+				+0.2
844,949	-				+1.0
844,949	-				+0.7
844,949	-				+1.2
844,952	+				-1.4
844,952	+				+0.2
844,953	-				+1.0
844,953	-				+0.2
844,953	-				-1.8
844,953	-				+1.8
844,960	+				+1.2
844,961	-				+2.6
844,998	+				+0.7
844,998	+				+1.2
844,998	+				+0.8
844,998	+				-1.9
844,999	-				+1.1
844,999	-				+0.3
844,999	-				+0.4
844,999	-				+1.9
845,151	+		Psyr_0741	0.22	+0.7
845,151	+		Psyr_0741	0.22	+0.5
845,183	+		Psyr_0741	0.28	+4.0
845,183	+		Psyr_0741	0.28	+0.2
845,183	+		Psyr_0741	0.28	+1.0
845,183	+		Psyr_0741	0.28	-0.4
845,183	+		Psyr_0741	0.28	+3.2
845,238	+		Psyr_0741	0.36	+2.0
845,303	+		Psyr_0741	0.46	-2.0
845,303	+		Psyr_0741	0.46	+0.8
845,304	-		Psyr_0741	0.47	+0.3
845,311	+		Psyr_0741	0.48	+0.9
845,312	-		Psyr_0741	0.48	-0.3
845,312	-		Psyr_0741	0.48	+1.3
845,312	-		Psyr_0741	0.48	-0.6
845,352	+		Psyr_0741	0.54	-1.0
845,352	+		Psyr_0741	0.54	-2.4
845,352	+		Psyr_0741	0.54	+0.2
845,353	-		Psyr_0741	0.54	-1.6
845,435	+		Psyr_0741	0.67	-2.2
845,435	+		Psyr_0741	0.67	-0.6
845,435	+		Psyr_0741	0.67	+0.9
845,435	+		Psyr_0741	0.67	-1.2
845,435	+		Psyr_0741	0.67	-0.5
845,495	-		Psyr_0741	0.77	+1.4
845,495	-		Psyr_0741	0.77	-0.4
845,651	-				-2.8
845,651	-				-0.8
845,685	+				+0.2
845,686	-				-1.4
845,697	+				-0.1
845,697	+				+0.4
845,697	+				+3.2
845,698	-				-2.4
845,698	-				+0.2
845,698	-				-1.8
845,698	-				-1.6
845,698	-				-0.8
845,698	-				+0.6
845,698	-				+1.0
845,698	-				+1.8
845,701	+				-0.6
845,701	+				-0.5
845,701	+				+1.7
845,727	+				-0.4
845,821	+		Psyr_0742	0.15	-0.1
845,845	+		Psyr_0742	0.18	-0.1
845,845	+		Psyr_0742	0.18	+0.2
845,845	+		Psyr_0742	0.18	+0.4
845,846	-		Psyr_0742	0.18	+0.5
845,994	+		Psyr_0742	0.36	+1.0
846,032	+		Psyr_0742	0.40	+0.7
846,163	+		Psyr_0742	0.56	+0.2
846,163	+		Psyr_0742	0.56	-1.4
846,283	+		Psyr_0742	0.70	-0.4
846,283	+		Psyr_0742	0.70	+0.3
846,284	-		Psyr_0742	0.71	+0.1
846,284	-		Psyr_0742	0.71	+2.2
846,284	-		Psyr_0742	0.71	-0.0
846,284	-		Psyr_0742	0.71	+1.0
846,284	-		Psyr_0742	0.71	-2.2
846,284	-		Psyr_0742	0.71	-1.0
846,284	-		Psyr_0742	0.71	-2.5
846,284	-		Psyr_0742	0.71	+0.6
846,321	-		Psyr_0742	0.75	-0.7
846,321	-		Psyr_0742	0.75	-0.5
846,321	-		Psyr_0742	0.75	+1.0
846,327	+		Psyr_0742	0.76	+0.3
846,327	+		Psyr_0742	0.76	-0.3
846,327	+		Psyr_0742	0.76	+0.4
846,327	+		Psyr_0742	0.76	-0.8
846,327	+		Psyr_0742	0.76	+0.6
846,328	-		Psyr_0742	0.76	-1.7
846,328	-		Psyr_0742	0.76	+0.7
846,328	-		Psyr_0742	0.76	-1.0
846,328	-		Psyr_0742	0.76	-0.4
846,328	-		Psyr_0742	0.76	-2.6
846,328	-		Psyr_0742	0.76	+0.7
846,365	+		Psyr_0742	0.80	-0.5
846,365	+		Psyr_0742	0.80	+2.0
846,481	-				-0.2
846,518	+				-0.1
846,543	+				+2.5
846,545	+				-1.2
846,545	+				+0.0
846,545	+				-0.2
846,545	+				+0.4
846,545	+				+0.2
846,545	+				+0.2
846,545	+				+0.7
846,545	+				+1.2
846,545	+				+2.2
846,546	-				+0.4
846,546	-				-1.4
846,546	-				-3.5
846,546	-				+1.4
846,546	-				+1.2
846,558	-				-1.1
846,566	+				-1.2
846,593	+				-0.4
846,593	+				-1.8
846,593	+				-1.4
846,593	+				-1.3
846,593	+				+0.3
846,593	+				+0.7
846,593	+				+0.4
846,593	+				-0.1
846,594	-				-1.2
846,594	-				+1.3
846,594	-				+0.5
846,594	-				-0.0
846,594	-				-1.1
846,594	-				-0.8
846,594	-				+2.5
846,594	-				+1.2
846,594	-				-1.0
846,595	+				+0.9
846,595	+				+1.7
846,595	+				+1.7
846,596	-				-0.4
846,659	+				-0.9
846,741	-				+0.0
846,754	+				-0.2
846,754	+				+1.8
846,754	+				+0.2
846,754	+				-0.8
846,754	+				+0.5
846,754	+				-1.0
846,754	+				-1.6
846,754	+				-0.9
846,754	+				-0.8
846,754	+				+0.2
846,754	+				+0.2
846,755	-				-2.0
846,755	-				-0.1
846,755	-				+1.2
846,755	-				+0.8
846,755	-				+0.2
846,755	-				+0.1
846,755	-				-1.4
846,755	-				+1.8
846,755	-				-0.4
846,756	+				-1.4
846,756	+				-0.5
846,756	+				+2.2
846,756	+				-0.2
846,756	+				-0.4
846,756	+				+1.2
846,756	+				+0.7
846,756	+				+0.7
846,756	+				+0.3
846,756	+				+0.8
846,756	+				+0.2
846,756	+				-2.4
846,756	+				-1.3
846,756	+				+0.8
846,756	+				-0.4
846,756	+				+0.8
846,757	-				-2.4
846,757	-				-1.9
846,757	-				-0.5
846,757	-				+0.3
846,757	-				+1.2
846,757	-				+0.3
846,757	-				+0.4
846,757	-				-0.7
846,757	-				-2.5
846,757	-				+0.2
846,757	-				-0.0
846,757	-				+2.8
846,757	-				+0.6
846,759	+				+1.8
846,760	-				-1.0
846,760	-				+2.1
846,760	-				+0.4
846,774	+				+0.6
846,774	+				+2.0
846,774	+				-0.0
846,775	-				-3.5
846,775	-				-0.2
846,775	-				-0.1
846,933	-				-1.3
846,981	+				-0.4
846,981	+				+0.2
846,981	+				+1.5
846,981	+				+0.8
846,981	+				-0.4
846,982	-				+0.8
846,982	-				+1.0
846,982	-				-1.1
846,982	-				-0.1
846,982	-				+0.6
846,994	+				+1.5
846,994	+				-0.0
846,994	+				-0.4
846,994	+				-0.6
846,994	+				+0.2
846,994	+				+0.2
846,994	+				-0.2
846,995	-				-0.8
846,995	-				-2.4
847,232	+		Psyr_0743	0.64	+0.2
847,232	+		Psyr_0743	0.64	-1.6
847,232	+		Psyr_0743	0.64	-1.8
847,232	+		Psyr_0743	0.64	+1.8
847,233	-		Psyr_0743	0.65	-2.0
847,233	-		Psyr_0743	0.65	+1.9
847,233	-		Psyr_0743	0.65	-0.1
847,233	-		Psyr_0743	0.65	-3.7
847,233	-		Psyr_0743	0.65	+0.5
847,233	-		Psyr_0743	0.65	+1.8
847,235	+		Psyr_0743	0.65	+1.0
847,236	-		Psyr_0743	0.65	-2.6
847,236	-		Psyr_0743	0.65	-1.6
847,236	-		Psyr_0743	0.65	-0.2
847,370	+				+0.2
847,371	-				-0.6
847,454	-				-2.8
847,468	+				-0.2
847,468	+				+1.5
847,469	-				+0.7
847,469	-				+0.5
847,469	-				+0.5
847,469	-				-1.8