Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0563 and Psyr_0564 are separated by 108 nucleotides Psyr_0564 and Psyr_0565 are separated by 96 nucleotides
Psyr_0563: Psyr_0563 - Protein of unknown function DUF258, at 639,956 to 640,987
_0563
Psyr_0564: Psyr_0564 - Exonuclease, at 641,096 to 641,632
_0564
Psyr_0565: Psyr_0565 - Protein of unknown function UPF0126, at 641,729 to 642,340
_0565
Position (kb) 641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.133 kb on + strand, within Psyr_0563 at 640.133 kb on + strand, within Psyr_0563 at 640.134 kb on - strand, within Psyr_0563 at 640.134 kb on - strand, within Psyr_0563 at 641.007 kb on - strand at 641.007 kb on - strand at 641.018 kb on + strand at 641.019 kb on - strand at 641.019 kb on - strand at 641.046 kb on + strand at 641.046 kb on + strand at 641.046 kb on + strand at 641.064 kb on + strand at 641.064 kb on + strand at 641.065 kb on - strand at 641.077 kb on + strand at 641.078 kb on - strand at 641.657 kb on - strand at 641.657 kb on - strand at 641.657 kb on - strand at 641.697 kb on - strand at 641.744 kb on + strand at 641.745 kb on - strand at 641.745 kb on - strand at 641.745 kb on - strand at 641.745 kb on - strand at 641.755 kb on + strand at 641.871 kb on + strand, within Psyr_0565 at 641.871 kb on + strand, within Psyr_0565 at 641.871 kb on + strand, within Psyr_0565 at 641.871 kb on + strand, within Psyr_0565 at 641.872 kb on - strand, within Psyr_0565 at 641.872 kb on - strand, within Psyr_0565 at 641.915 kb on + strand, within Psyr_0565 at 641.916 kb on - strand, within Psyr_0565 at 642.025 kb on + strand, within Psyr_0565 at 642.025 kb on + strand, within Psyr_0565 at 642.040 kb on + strand, within Psyr_0565 at 642.040 kb on + strand, within Psyr_0565 at 642.041 kb on - strand, within Psyr_0565 at 642.170 kb on + strand, within Psyr_0565 at 642.171 kb on - strand, within Psyr_0565 at 642.210 kb on + strand, within Psyr_0565 at 642.211 kb on - strand, within Psyr_0565 at 642.218 kb on + strand, within Psyr_0565 at 642.219 kb on - strand, within Psyr_0565 at 642.323 kb on + strand at 642.324 kb on - strand at 642.324 kb on - strand at 642.324 kb on - strand at 642.325 kb on + strand at 642.326 kb on - strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.376 kb on + strand at 642.377 kb on - strand at 642.377 kb on - strand at 642.377 kb on - strand at 642.408 kb on - strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.415 kb on + strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.416 kb on - strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.470 kb on + strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand at 642.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 640,133 + Psyr_0563 0.17 +0.2 640,133 + Psyr_0563 0.17 -1.8 640,134 - Psyr_0563 0.17 -1.4 640,134 - Psyr_0563 0.17 +0.2 641,007 - +0.2 641,007 - +0.1 641,018 + -0.8 641,019 - -2.1 641,019 - +2.2 641,046 + -0.4 641,046 + +0.8 641,046 + -3.4 641,064 + +1.5 641,064 + -0.8 641,065 - +1.2 641,077 + +0.2 641,078 - -0.0 641,657 - -0.2 641,657 - -1.6 641,657 - -1.1 641,697 - -2.8 641,744 + +1.9 641,745 - -1.9 641,745 - -0.8 641,745 - +0.2 641,745 - +1.0 641,755 + +0.3 641,871 + Psyr_0565 0.23 -2.4 641,871 + Psyr_0565 0.23 -2.2 641,871 + Psyr_0565 0.23 -2.4 641,871 + Psyr_0565 0.23 -0.8 641,872 - Psyr_0565 0.23 -1.4 641,872 - Psyr_0565 0.23 -0.4 641,915 + Psyr_0565 0.30 +1.0 641,916 - Psyr_0565 0.31 -1.6 642,025 + Psyr_0565 0.48 +0.4 642,025 + Psyr_0565 0.48 -0.2 642,040 + Psyr_0565 0.51 -2.1 642,040 + Psyr_0565 0.51 +0.0 642,041 - Psyr_0565 0.51 -2.6 642,170 + Psyr_0565 0.72 -0.4 642,171 - Psyr_0565 0.72 -1.4 642,210 + Psyr_0565 0.79 +1.0 642,211 - Psyr_0565 0.79 +0.2 642,218 + Psyr_0565 0.80 +0.9 642,219 - Psyr_0565 0.80 +0.2 642,323 + -0.9 642,324 - -0.6 642,324 - +2.2 642,324 - +1.3 642,325 + -0.1 642,326 - -2.4 642,376 + -0.3 642,376 + +1.1 642,376 + -0.5 642,376 + +1.6 642,376 + +0.6 642,377 - -0.2 642,377 - +1.2 642,377 - +0.8 642,408 - -1.2 642,415 + +1.8 642,415 + -0.8 642,415 + -0.8 642,415 + -1.4 642,415 + -0.6 642,415 + -0.9 642,415 + +0.2 642,415 + +0.2 642,415 + +1.1 642,415 + -1.4 642,415 + +0.3 642,415 + +2.2 642,416 - -2.2 642,416 - +0.1 642,416 - -1.4 642,416 - +0.5 642,416 - -0.3 642,416 - -0.9 642,416 - -0.4 642,416 - +1.3 642,416 - -0.1 642,470 + -0.7 642,470 + -1.5 642,470 + -1.5 642,470 + +0.1 642,470 + +2.6 642,470 + +2.2 642,470 + -0.6 642,470 + +0.7 642,470 + -0.4 642,471 - +0.8 642,471 - +1.2 642,471 - +0.8 642,471 - +0.6 642,471 - +1.2 642,471 - +1.1
Or see this region's nucleotide sequence