Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0246

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0245 and Psyr_0246 are separated by 153 nucleotidesPsyr_0246 and Psyr_0247 are separated by 43 nucleotidesPsyr_0247 and Psyr_0248 are separated by 69 nucleotidesPsyr_0248 and Psyr_0249 are separated by 141 nucleotides Psyr_0245: Psyr_0245 - Binding-protein-dependent transport systems inner membrane component, at 257,895 to 259,511 _0245 Psyr_0246: Psyr_0246 - aminomethyltransferase, at 259,665 to 260,747 _0246 Psyr_0247: Psyr_0247 - glycine cleavage system H protein, at 260,791 to 261,177 _0247 Psyr_0248: Psyr_0248 - conserved hypothetical protein, at 261,247 to 261,567 _0248 Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493 _0249 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 258.876 kb on + strand, within Psyr_0245at 258.876 kb on + strand, within Psyr_0245at 258.877 kb on - strand, within Psyr_0245at 258.941 kb on + strand, within Psyr_0245at 258.941 kb on + strand, within Psyr_0245at 258.941 kb on + strand, within Psyr_0245at 258.941 kb on + strand, within Psyr_0245at 258.942 kb on - strand, within Psyr_0245at 258.942 kb on - strand, within Psyr_0245at 258.942 kb on - strand, within Psyr_0245at 258.942 kb on - strand, within Psyr_0245at 258.942 kb on - strand, within Psyr_0245at 259.044 kb on + strand, within Psyr_0245at 259.044 kb on + strand, within Psyr_0245at 259.135 kb on + strand, within Psyr_0245at 259.140 kb on + strand, within Psyr_0245at 259.266 kb on + strand, within Psyr_0245at 259.266 kb on + strand, within Psyr_0245at 259.266 kb on + strand, within Psyr_0245at 259.266 kb on + strand, within Psyr_0245at 259.266 kb on + strand, within Psyr_0245at 259.267 kb on - strand, within Psyr_0245at 259.267 kb on - strand, within Psyr_0245at 259.267 kb on - strand, within Psyr_0245at 259.352 kb on + strandat 259.456 kb on + strandat 259.456 kb on + strandat 259.456 kb on + strandat 259.457 kb on - strandat 259.462 kb on + strandat 259.462 kb on + strandat 259.463 kb on - strandat 259.463 kb on - strandat 259.463 kb on - strandat 259.463 kb on - strandat 259.509 kb on + strandat 259.509 kb on + strandat 259.510 kb on - strandat 259.568 kb on + strandat 259.568 kb on + strandat 259.568 kb on + strandat 259.584 kb on + strandat 259.585 kb on - strandat 259.585 kb on - strandat 259.676 kb on + strandat 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.885 kb on + strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.886 kb on - strand, within Psyr_0246at 259.917 kb on + strand, within Psyr_0246at 259.917 kb on + strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.918 kb on - strand, within Psyr_0246at 259.968 kb on + strand, within Psyr_0246at 259.968 kb on + strand, within Psyr_0246at 260.227 kb on - strand, within Psyr_0246at 260.368 kb on - strand, within Psyr_0246at 260.454 kb on - strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.557 kb on + strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.558 kb on - strand, within Psyr_0246at 260.597 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.609 kb on + strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.610 kb on - strand, within Psyr_0246at 260.745 kb on + strandat 260.745 kb on + strandat 260.746 kb on - strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.750 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.788 kb on + strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.789 kb on - strandat 260.799 kb on + strandat 260.998 kb on - strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.001 kb on + strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.002 kb on - strand, within Psyr_0247at 261.154 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.248 kb on + strandat 261.249 kb on - strandat 261.249 kb on - strandat 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.449 kb on + strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.450 kb on - strand, within Psyr_0248at 261.575 kb on + strandat 261.575 kb on + strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.576 kb on - strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.611 kb on + strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.612 kb on - strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.625 kb on - strandat 261.657 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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258,876 + Psyr_0245 0.61 +1.6
258,876 + Psyr_0245 0.61 +0.6
258,877 - Psyr_0245 0.61 +0.3
258,941 + Psyr_0245 0.65 -1.3
258,941 + Psyr_0245 0.65 +0.8
258,941 + Psyr_0245 0.65 +0.9
258,941 + Psyr_0245 0.65 +0.3
258,942 - Psyr_0245 0.65 +0.1
258,942 - Psyr_0245 0.65 -0.3
258,942 - Psyr_0245 0.65 +2.6
258,942 - Psyr_0245 0.65 +1.2
258,942 - Psyr_0245 0.65 -0.5
259,044 + Psyr_0245 0.71 -1.3
259,044 + Psyr_0245 0.71 +1.3
259,135 + Psyr_0245 0.77 -0.7
259,140 + Psyr_0245 0.77 +1.0
259,266 + Psyr_0245 0.85 -1.4
259,266 + Psyr_0245 0.85 -0.1
259,266 + Psyr_0245 0.85 -2.0
259,266 + Psyr_0245 0.85 -1.0
259,266 + Psyr_0245 0.85 -0.1
259,267 - Psyr_0245 0.85 +0.9
259,267 - Psyr_0245 0.85 +2.9
259,267 - Psyr_0245 0.85 +0.3
259,352 + +1.0
259,456 + +0.5
259,456 + +1.2
259,456 + +2.0
259,457 - -1.4
259,462 + -0.3
259,462 + -0.4
259,463 - +1.0
259,463 - +0.8
259,463 - -0.3
259,463 - +0.0
259,509 + -1.1
259,509 + +0.8
259,510 - -1.4
259,568 + -0.7
259,568 + +0.3
259,568 + -2.3
259,584 + +1.0
259,585 - +0.8
259,585 - +1.0
259,676 + -1.3
259,885 + Psyr_0246 0.20 -2.3
259,885 + Psyr_0246 0.20 -1.0
259,885 + Psyr_0246 0.20 -0.9
259,885 + Psyr_0246 0.20 -2.8
259,885 + Psyr_0246 0.20 -0.1
259,885 + Psyr_0246 0.20 +2.6
259,885 + Psyr_0246 0.20 -1.2
259,885 + Psyr_0246 0.20 -1.7
259,886 - Psyr_0246 0.20 +0.0
259,886 - Psyr_0246 0.20 -0.1
259,886 - Psyr_0246 0.20 -2.5
259,886 - Psyr_0246 0.20 +0.5
259,886 - Psyr_0246 0.20 -0.3
259,886 - Psyr_0246 0.20 -1.3
259,886 - Psyr_0246 0.20 +0.7
259,886 - Psyr_0246 0.20 -0.4
259,917 + Psyr_0246 0.23 +1.7
259,917 + Psyr_0246 0.23 +1.0
259,918 - Psyr_0246 0.23 -0.3
259,918 - Psyr_0246 0.23 -0.7
259,918 - Psyr_0246 0.23 -0.3
259,918 - Psyr_0246 0.23 -2.0
259,918 - Psyr_0246 0.23 -0.1
259,918 - Psyr_0246 0.23 +1.3
259,918 - Psyr_0246 0.23 +0.6
259,918 - Psyr_0246 0.23 +0.8
259,968 + Psyr_0246 0.28 +0.3
259,968 + Psyr_0246 0.28 +0.4
260,227 - Psyr_0246 0.52 -1.3
260,368 - Psyr_0246 0.65 -0.5
260,454 - Psyr_0246 0.73 +1.5
260,557 + Psyr_0246 0.82 -2.3
260,557 + Psyr_0246 0.82 -2.2
260,557 + Psyr_0246 0.82 -2.5
260,557 + Psyr_0246 0.82 +3.3
260,557 + Psyr_0246 0.82 +0.3
260,557 + Psyr_0246 0.82 -2.0
260,557 + Psyr_0246 0.82 -0.1
260,558 - Psyr_0246 0.82 +0.8
260,558 - Psyr_0246 0.82 +0.2
260,558 - Psyr_0246 0.82 +0.3
260,558 - Psyr_0246 0.82 -1.7
260,558 - Psyr_0246 0.82 +1.3
260,558 - Psyr_0246 0.82 -2.5
260,558 - Psyr_0246 0.82 +0.3
260,597 + Psyr_0246 0.86 +1.7
260,609 + Psyr_0246 0.87 +0.8
260,609 + Psyr_0246 0.87 -1.7
260,609 + Psyr_0246 0.87 -0.4
260,610 - Psyr_0246 0.87 +1.0
260,610 - Psyr_0246 0.87 -1.7
260,610 - Psyr_0246 0.87 -0.2
260,610 - Psyr_0246 0.87 -0.4
260,745 + -0.7
260,745 + -1.9
260,746 - +1.3
260,750 + +0.9
260,750 + +1.0
260,750 + +0.3
260,750 + +0.3
260,788 + +1.0
260,788 + -1.3
260,788 + +0.6
260,788 + +1.9
260,788 + -0.3
260,789 - +0.1
260,789 - +0.4
260,789 - -0.7
260,799 + +0.2
260,998 - Psyr_0247 0.53 -0.7
261,001 + Psyr_0247 0.54 +0.6
261,001 + Psyr_0247 0.54 +0.1
261,001 + Psyr_0247 0.54 -2.9
261,001 + Psyr_0247 0.54 -0.2
261,001 + Psyr_0247 0.54 -0.7
261,001 + Psyr_0247 0.54 +0.2
261,001 + Psyr_0247 0.54 +0.7
261,001 + Psyr_0247 0.54 -1.7
261,002 - Psyr_0247 0.55 +1.2
261,002 - Psyr_0247 0.55 +1.5
261,002 - Psyr_0247 0.55 -0.5
261,002 - Psyr_0247 0.55 +0.3
261,154 + -1.0
261,248 + +1.3
261,248 + +2.0
261,248 + -0.1
261,248 + -1.7
261,248 + -0.6
261,249 - +0.9
261,249 - +0.8
261,449 + Psyr_0248 0.63 +0.5
261,449 + Psyr_0248 0.63 -0.2
261,449 + Psyr_0248 0.63 +0.2
261,450 - Psyr_0248 0.63 +0.8
261,450 - Psyr_0248 0.63 -0.0
261,575 + -2.9
261,575 + -0.9
261,576 - -2.0
261,576 - -0.3
261,576 - -0.1
261,611 + -0.6
261,611 + +0.5
261,611 + +1.2
261,611 + +2.5
261,612 - -1.0
261,612 - +0.1
261,612 - -1.7
261,612 - -1.3
261,624 + +0.0
261,624 + +0.0
261,624 + +0.5
261,624 + -2.3
261,624 + +0.3
261,624 + -0.2
261,624 + -0.1
261,625 - +0.1
261,625 - -0.7
261,625 - +1.3
261,625 - -1.5
261,625 - +0.3
261,625 - -0.2
261,625 - -0.5
261,657 + +1.3

Or see this region's nucleotide sequence