Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0177

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
189,635	+				+1.4
189,783	+		Psyr_0175	0.48	+0.2
189,783	+		Psyr_0175	0.48	+0.5
189,783	+		Psyr_0175	0.48	-0.7
189,783	+		Psyr_0175	0.48	+1.2
189,783	+		Psyr_0175	0.48	+0.4
189,783	+		Psyr_0175	0.48	-0.5
189,783	+		Psyr_0175	0.48	+1.6
189,783	+		Psyr_0175	0.48	+0.8
189,783	+		Psyr_0175	0.48	+0.8
189,783	+		Psyr_0175	0.48	+0.6
189,784	-		Psyr_0175	0.48	+1.3
189,784	-		Psyr_0175	0.48	-0.1
189,784	-		Psyr_0175	0.48	+1.9
189,784	-		Psyr_0175	0.48	+0.7
189,784	-		Psyr_0175	0.48	+1.5
189,798	-		Psyr_0175	0.53	-0.1
189,798	-		Psyr_0175	0.53	-0.0
189,880	-		Psyr_0175	0.83	+0.8
189,880	-		Psyr_0175	0.83	-0.2
189,880	-		Psyr_0175	0.83	+1.0
189,954	+				-0.2
189,954	+				-0.1
189,954	+				+0.9
189,954	+				-0.7
189,954	+				-0.7
189,954	+				+0.1
189,954	+				+0.7
189,954	+				+2.8
189,954	+				-0.3
189,954	+				+1.7
189,954	+				+0.3
189,954	+				-0.7
189,954	+				+0.6
189,954	+				+1.9
189,954	+				+0.7
189,954	+				+1.7
189,955	-				+1.9
189,955	-				+0.9
189,955	-				+1.3
189,955	-				-0.4
189,955	-				+1.2
189,955	-				+0.8
189,955	-				+0.3
189,955	-				-1.5
189,955	-				+1.0
189,955	-				+1.2
189,955	-				-0.7
189,955	-				+1.3
189,955	-				+0.6
189,955	-				-0.4
189,955	-				+2.0
189,956	+				+0.3
189,956	+				-0.8
189,956	+				+1.7
189,956	+				+1.2
189,956	+				+0.2
189,956	+				+0.5
189,956	+				-2.3
189,956	+				+0.8
189,956	+				-2.3
189,956	+				-1.5
189,956	+				-2.7
189,956	+				-0.4
189,956	+				+0.3
189,956	+				+0.4
189,956	+				-0.0
189,956	+				+1.2
189,956	+				-0.1
189,956	+				+0.7
189,957	-				+0.5
189,957	-				-1.6
189,957	-				+0.8
189,957	-				+2.9
189,957	-				+0.8
189,957	-				+1.1
189,957	-				+0.3
189,957	-				+0.7
189,957	-				+0.6
189,957	-				+0.5
189,957	-				+0.6
189,957	-				+0.5
189,957	-				+0.9
189,957	-				+0.7
189,957	-				+1.1
189,957	-				-0.4
189,957	-				-0.8
189,957	-				-0.2
189,957	-				-0.2
189,957	-				+1.1
189,957	-				+1.3
189,957	-				+0.8
189,957	-				+0.3
189,957	-				-1.3
189,957	-				+1.1
189,983	+				-0.5
189,983	+				-1.0
189,983	+				-0.3
189,984	-				-0.5
189,984	-				+1.3
190,116	+				-1.1
190,116	+				+0.3
190,116	+				-0.2
190,116	+				-0.1
190,116	+				-0.8
190,117	-				+0.6
190,117	-				+1.8
190,117	-				-0.2
190,117	-				-0.1
190,117	-				+0.4
190,119	+				+0.3
190,119	+				+0.3
190,119	+				-0.5
190,120	-				+0.8
190,120	-				+0.9
190,120	-				+2.9
190,120	-				+1.0
190,123	-				+1.4
190,138	+				-1.2
190,138	+				-2.0
190,139	-				+1.9
190,139	-				+0.2
190,142	+				+0.2
190,142	+				+0.3
190,142	+				+0.7
190,142	+				+2.2
190,142	+				-0.9
190,142	+				+0.1
190,142	+				-0.3
190,142	+				-0.7
190,142	+				-0.4
190,142	+				+0.3
190,142	+				+0.7
190,142	+				+0.4
190,143	-				+0.5
190,143	-				+2.1
190,143	-				+0.8
190,143	-				+1.9
190,143	-				+0.5
190,143	-				+1.8
190,143	-				+1.4
190,143	-				-2.0
190,143	-				-0.7
190,143	-				-3.9
190,143	-				+0.7
190,149	+				-0.4
190,149	+				-0.8
190,149	+				+1.0
190,149	+				+1.6
190,150	-				+0.8
190,152	-				+0.5
190,235	-		Psyr_0176	0.37	+1.3
190,235	-		Psyr_0176	0.37	+0.1
190,235	-		Psyr_0176	0.37	+0.1
190,437	+				-0.8
190,477	-				-0.3
190,477	-				+1.0
190,536	-				+0.7
190,696	+				-1.0
190,696	+				+0.7
190,696	+				+2.9
190,696	+				+1.9
190,696	+				+0.6
190,696	+				+0.2
190,696	+				-0.5
190,697	-				+0.3
190,697	-				-0.0
190,697	-				-0.2
190,697	-				+0.9
190,697	-				+1.0
190,697	-				-0.5
190,697	-				+2.5
190,697	-				-0.8
190,697	-				-0.6
190,773	-				-0.9
190,865	+		Psyr_0177	0.10	+1.0
190,865	+		Psyr_0177	0.10	+0.9
190,866	-		Psyr_0177	0.10	+2.0
190,866	-		Psyr_0177	0.10	-2.0
191,156	+		Psyr_0177	0.20	-0.5
191,157	-		Psyr_0177	0.20	-0.7
191,157	-		Psyr_0177	0.20	+0.7
191,157	-		Psyr_0177	0.20	+0.5
191,188	+		Psyr_0177	0.22	-0.0
191,189	-		Psyr_0177	0.22	-1.5
191,234	+		Psyr_0177	0.23	+2.0
191,235	-		Psyr_0177	0.23	+0.3
191,235	-		Psyr_0177	0.23	+1.9
191,235	-		Psyr_0177	0.23	+1.5
191,235	-		Psyr_0177	0.23	+0.7
191,235	-		Psyr_0177	0.23	+0.3
191,235	-		Psyr_0177	0.23	-0.8
191,235	-		Psyr_0177	0.23	-1.0
191,249	+		Psyr_0177	0.24	-0.8
191,249	+		Psyr_0177	0.24	+0.6
191,249	+		Psyr_0177	0.24	-0.0
191,249	+		Psyr_0177	0.24	+1.8
191,249	+		Psyr_0177	0.24	-1.8
191,250	-		Psyr_0177	0.24	+0.7
191,250	-		Psyr_0177	0.24	-3.6
191,250	-		Psyr_0177	0.24	+1.0
191,250	-		Psyr_0177	0.24	+0.6
191,258	+		Psyr_0177	0.24	-0.0
191,258	+		Psyr_0177	0.24	-0.3
191,258	+		Psyr_0177	0.24	+1.4
191,258	+		Psyr_0177	0.24	+1.2
191,258	+		Psyr_0177	0.24	+0.4
191,258	+		Psyr_0177	0.24	+1.3
191,259	-		Psyr_0177	0.24	+1.3
191,259	-		Psyr_0177	0.24	+1.5
191,259	-		Psyr_0177	0.24	+0.3
191,361	+		Psyr_0177	0.28	-0.2
191,394	-		Psyr_0177	0.29	-0.2
191,394	-		Psyr_0177	0.29	-0.4
191,429	+		Psyr_0177	0.30	-0.2
191,429	+		Psyr_0177	0.30	-0.9
191,429	+		Psyr_0177	0.30	+0.2
191,430	-		Psyr_0177	0.30	-0.7
191,430	-		Psyr_0177	0.30	+0.3
191,430	-		Psyr_0177	0.30	-0.2
191,522	+		Psyr_0177	0.33	-0.1
191,522	+		Psyr_0177	0.33	-0.5
191,522	+		Psyr_0177	0.33	-0.3
191,522	+		Psyr_0177	0.33	-0.2
191,522	+		Psyr_0177	0.33	-0.2
191,522	+		Psyr_0177	0.33	+0.8
191,522	+		Psyr_0177	0.33	-0.2
191,522	+		Psyr_0177	0.33	-2.5
191,522	+		Psyr_0177	0.33	-0.7
191,522	+		Psyr_0177	0.33	-0.3
191,522	+		Psyr_0177	0.33	+1.3
191,523	-		Psyr_0177	0.33	-1.0
191,523	-		Psyr_0177	0.33	+1.4
191,523	-		Psyr_0177	0.33	-0.6
191,523	-		Psyr_0177	0.33	+1.1
191,523	-		Psyr_0177	0.33	-0.4
191,523	-		Psyr_0177	0.33	-0.7
191,523	-		Psyr_0177	0.33	-0.7
191,523	-		Psyr_0177	0.33	+1.0
191,606	+		Psyr_0177	0.36	+1.3
191,607	-		Psyr_0177	0.36	+2.9
191,798	+		Psyr_0177	0.43	+2.3
191,798	+		Psyr_0177	0.43	+0.8
191,798	+		Psyr_0177	0.43	+0.9
191,798	+		Psyr_0177	0.43	+1.3
191,798	+		Psyr_0177	0.43	-1.3
191,798	+		Psyr_0177	0.43	-2.5
191,798	+		Psyr_0177	0.43	-1.2
191,799	-		Psyr_0177	0.43	+0.2
191,799	-		Psyr_0177	0.43	+0.9
191,799	-		Psyr_0177	0.43	+0.6
191,799	-		Psyr_0177	0.43	+1.0
191,799	-		Psyr_0177	0.43	+0.3
191,799	-		Psyr_0177	0.43	-0.7
191,799	-		Psyr_0177	0.43	+1.5
191,892	-		Psyr_0177	0.46	+1.3
191,965	+		Psyr_0177	0.49	-0.6
191,965	+		Psyr_0177	0.49	-1.3
191,965	+		Psyr_0177	0.49	-0.7
191,966	-		Psyr_0177	0.49	+0.1
191,966	-		Psyr_0177	0.49	+0.3
192,026	+		Psyr_0177	0.51	+0.2
192,026	+		Psyr_0177	0.51	+1.3
192,026	+		Psyr_0177	0.51	+1.0
192,026	+		Psyr_0177	0.51	+2.4
192,027	-		Psyr_0177	0.51	+0.4
192,027	-		Psyr_0177	0.51	+0.8
192,027	-		Psyr_0177	0.51	+1.1
192,027	-		Psyr_0177	0.51	+1.0
192,027	-		Psyr_0177	0.51	-0.6
192,285	+		Psyr_0177	0.60	+0.9
192,285	+				+1.9
192,285	+		Psyr_0177	0.60	+0.1
192,285	+		Psyr_0177	0.60	-0.7
192,285	+		Psyr_0177	0.60	-0.7
192,286	-		Psyr_0177	0.60	-0.5
192,341	-		Psyr_0177	0.62	+0.3
192,430	+		Psyr_0177	0.65	+2.0
192,430	+		Psyr_0177	0.65	+0.3
192,431	-		Psyr_0177	0.65	+1.1
192,431	-		Psyr_0177	0.65	+0.8
192,668	+		Psyr_0177	0.74	+0.3
192,669	-		Psyr_0177	0.74	+0.3
192,740	+		Psyr_0177	0.76	+1.3
192,740	+		Psyr_0177	0.76	-0.4
192,740	+		Psyr_0177	0.76	-2.7
192,741	-		Psyr_0177	0.76	-0.4
192,741	-		Psyr_0177	0.76	+0.3
192,765	-		Psyr_0177	0.77	+0.1
192,858	-		Psyr_0177	0.80	+0.0
192,887	+		Psyr_0177	0.81	+0.3
192,887	+		Psyr_0177	0.81	-0.5
192,887	+		Psyr_0177	0.81	+0.2
192,887	+		Psyr_0177	0.81	+0.7
192,887	+		Psyr_0177	0.81	-1.7
192,888	-		Psyr_0177	0.81	+2.7
192,888	-		Psyr_0177	0.81	+0.1
192,888	-		Psyr_0177	0.81	+1.9
193,036	+		Psyr_0177	0.86	+1.9
193,053	-		Psyr_0177	0.87	+0.1
193,053	-		Psyr_0177	0.87	+1.6
193,055	+		Psyr_0177	0.87	+0.5
193,055	+		Psyr_0177	0.87	+1.6
193,136	+				+0.8
193,136	+				-0.7
193,136	+				-0.5
193,136	+				-0.3
193,136	+				+0.3
193,143	+				-1.3
193,144	-				-0.6
193,144	-				-0.1
193,144	-				-0.3
193,193	+				-0.8
193,193	+				-0.8
193,194	-				+0.6
193,226	+				+0.3
193,226	+				-0.7
193,226	+				-0.7
193,242	-				+0.8
193,301	+				-0.7
193,301	+				-1.9
193,301	+				-2.5
193,301	+				-0.0
193,301	+				-0.1
193,302	-				-1.7
193,302	-				-0.2
193,302	-				+3.3
193,302	-				-2.0
193,302	-				+2.3
193,554	-				-0.0
193,583	+				-0.3
193,583	+				+1.4
193,583	+				-1.3
193,583	+				-0.7
193,745	+		Psyr_0178	0.47	+0.6
193,745	+		Psyr_0178	0.47	-2.3
193,745	+		Psyr_0178	0.47	+1.3
193,746	-		Psyr_0178	0.48	+0.5
193,918	+		Psyr_0178	0.90	+1.5
193,918	+		Psyr_0178	0.90	+0.7
193,918	+		Psyr_0178	0.90	+0.0
193,919	-				+0.4
193,919	-				-0.0
193,919	-				+0.6
193,919	-				+2.0
193,919	-				-2.7
193,978	+				-0.7
193,978	+				+0.9
193,979	-				-0.3
193,991	+				-0.6
193,991	+				-0.9
193,991	+				+1.3
193,991	+				-0.4
193,992	-				-0.5
193,992	-				+0.3
193,992	-				+0.3
194,058	+				-2.6
194,059	-				-0.5
194,059	-				+0.7
194,071	+				+0.1
194,072	-				+1.8
194,075	+				+1.3
194,075	+				+0.7
194,075	+				-0.7
194,075	+				+0.3
194,075	+				+1.6
194,076	-				-0.2
194,076	-				-1.3
194,076	-				+0.7
194,076	-				+0.0
194,076	-				-0.8
194,076	-				+0.8
194,076	-				-1.7
194,076	-				+1.3
194,076	-				+0.3
194,076	-				-0.7
194,076	-				-0.2
194,258	+		Psyr_0179	0.69	-0.4
194,258	+		Psyr_0179	0.69	-0.4
194,259	-		Psyr_0179	0.70	-0.3