Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0096

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
105,629	+		Psyr_0095	0.48	+1.0
105,629	+		Psyr_0095	0.48	+0.6
105,629	+		Psyr_0095	0.48	+1.3
105,630	-		Psyr_0095	0.48	+0.0
105,630	-		Psyr_0095	0.48	+1.1
105,630	-		Psyr_0095	0.48	+0.5
105,630	-		Psyr_0095	0.48	+1.0
105,630	-		Psyr_0095	0.48	-0.4
105,630	-		Psyr_0095	0.48	-0.3
105,630	-		Psyr_0095	0.48	+0.7
105,630	-		Psyr_0095	0.48	-0.3
105,630	-		Psyr_0095	0.48	-0.5
105,636	+		Psyr_0095	0.48	+0.8
105,636	+		Psyr_0095	0.48	+0.2
105,636	+		Psyr_0095	0.48	+2.1
105,636	+		Psyr_0095	0.48	-1.2
105,636	+		Psyr_0095	0.48	+0.3
105,636	+		Psyr_0095	0.48	+0.3
105,637	-		Psyr_0095	0.48	+0.2
105,662	-		Psyr_0095	0.50	-1.7
105,847	-		Psyr_0095	0.63	-0.7
105,847	-		Psyr_0095	0.63	+0.3
105,854	+		Psyr_0095	0.64	-0.1
105,854	+		Psyr_0095	0.64	-0.3
105,854	+		Psyr_0095	0.64	+1.1
105,855	-		Psyr_0095	0.64	+0.5
105,937	+		Psyr_0095	0.69	-3.5
105,937	+		Psyr_0095	0.69	+1.2
105,937	+		Psyr_0095	0.69	+0.3
106,039	+		Psyr_0095	0.77	+0.7
106,167	+		Psyr_0095	0.86	+1.1
106,167	+		Psyr_0095	0.86	-0.7
106,167	+		Psyr_0095	0.86	-0.7
106,194	+		Psyr_0095	0.88	+0.3
106,194	+		Psyr_0095	0.88	+0.4
106,195	-		Psyr_0095	0.88	+0.3
106,229	-				+0.5
106,266	+				-1.8
106,266	+				-0.3
106,266	+				-0.5
106,266	+				-0.1
106,266	+				-0.7
106,266	+				-1.4
106,266	+				+0.2
106,267	-				-0.3
106,267	-				-1.3
106,267	-				-0.7
106,267	-				-0.4
106,268	+				-0.1
106,268	+				+1.3
106,268	+				+0.3
106,268	+				+2.2
106,268	+				+1.1
106,268	+				-1.7
106,268	+				+0.2
106,268	+				-1.7
106,268	+				-1.7
106,269	-				+0.1
106,269	-				+1.0
106,269	-				+1.1
106,269	-				-0.7
106,269	-				+0.7
106,269	-				-0.1
106,269	-				-1.3
106,269	-				+1.6
106,269	-				+0.0
106,269	-				+0.6
106,269	-				+0.6
106,269	-				+0.5
106,269	-				+0.3
106,269	-				-1.8
106,269	-				-1.3
106,274	+				+1.2
106,274	+				-0.1
106,275	-				+1.8
106,275	-				+0.3
106,275	-				-1.0
106,328	+				+0.0
106,328	+				-0.7
106,328	+				-0.2
106,329	-				+0.7
106,362	+				+0.5
106,362	+				+0.6
106,362	+				-0.7
106,362	+				-0.4
106,362	+				-0.5
106,362	+				-2.5
106,363	-				-0.6
106,363	-				-1.1
106,363	-				+2.6
106,363	-				-2.5
106,363	-				+0.2
106,387	-				-0.1
106,581	+				-0.7
106,581	+				+0.3
106,581	+				+0.6
106,581	+				+0.4
106,581	+				+1.1
106,582	-				-0.1
106,582	-				-0.1
106,824	+		Psyr_0096	0.25	-0.3
106,825	-		Psyr_0096	0.25	-1.2
106,870	+		Psyr_0096	0.29	+0.9
106,870	+		Psyr_0096	0.29	-0.7
106,870	+		Psyr_0096	0.29	+1.4
106,870	+		Psyr_0096	0.29	-0.3
106,870	+		Psyr_0096	0.29	+0.3
106,871	-		Psyr_0096	0.30	-0.2
106,871	-		Psyr_0096	0.30	-1.0
106,871	-		Psyr_0096	0.30	+0.7
106,871	-		Psyr_0096	0.30	+2.4
106,900	-		Psyr_0096	0.33	+1.5
106,919	+		Psyr_0096	0.34	-0.3
106,919	+		Psyr_0096	0.34	-0.4
106,920	-		Psyr_0096	0.35	+1.1
106,920	-		Psyr_0096	0.35	+1.2
106,920	-		Psyr_0096	0.35	+1.0
106,982	+		Psyr_0096	0.41	+1.1
106,983	-		Psyr_0096	0.41	+0.6
106,983	-		Psyr_0096	0.41	+0.5
106,985	+		Psyr_0096	0.41	+0.2
107,046	+		Psyr_0096	0.47	+0.8
107,046	+		Psyr_0096	0.47	-0.2
107,047	-		Psyr_0096	0.47	-0.2
107,047	-		Psyr_0096	0.47	+0.2
107,047	-		Psyr_0096	0.47	+0.8
107,047	-		Psyr_0096	0.47	+0.5
107,047	-		Psyr_0096	0.47	+0.3
107,047	-		Psyr_0096	0.47	-0.4
107,050	-		Psyr_0096	0.48	+1.5
107,057	-		Psyr_0096	0.48	-0.4
107,184	+		Psyr_0096	0.61	-0.2
107,184	+		Psyr_0096	0.61	-0.9
107,185	-		Psyr_0096	0.61	-1.3
107,185	-		Psyr_0096	0.61	+1.5
107,191	+		Psyr_0096	0.62	+1.5
107,192	-		Psyr_0096	0.62	-0.1
107,192	-		Psyr_0096	0.62	-1.3
107,192	-		Psyr_0096	0.62	-0.4
107,196	-		Psyr_0096	0.63	-1.6
107,319	+		Psyr_0096	0.75	+2.3
107,319	+		Psyr_0096	0.75	+0.7
107,319	+		Psyr_0096	0.75	-0.3
107,319	+		Psyr_0096	0.75	+0.3
107,319	+		Psyr_0096	0.75	-1.3
107,319	+		Psyr_0096	0.75	-2.0
107,319	+		Psyr_0096	0.75	+0.8
107,319	+		Psyr_0096	0.75	+0.6
107,319	+		Psyr_0096	0.75	-0.7
107,319	+		Psyr_0096	0.75	+0.0
107,319	+		Psyr_0096	0.75	+1.0
107,319	+		Psyr_0096	0.75	-0.8
107,320	-		Psyr_0096	0.75	+1.2
107,320	-		Psyr_0096	0.75	-0.1
107,320	-		Psyr_0096	0.75	+0.5
107,320	-		Psyr_0096	0.75	+0.7
107,320	-		Psyr_0096	0.75	+0.1
107,320	-		Psyr_0096	0.75	+0.3
107,320	-		Psyr_0096	0.75	-0.8
107,320	-		Psyr_0096	0.75	+0.5
107,400	+		Psyr_0096	0.83	-0.3
107,434	-		Psyr_0096	0.87	-0.3
107,434	-		Psyr_0096	0.87	-0.9
107,434	-		Psyr_0096	0.87	-0.9
107,434	-		Psyr_0096	0.87	-1.0
107,529	+				+0.8
107,529	+				+1.3
107,604	+				-0.2
107,605	-				+1.3
107,669	-				-0.3
107,669	-				-0.9
107,717	+				+0.6
107,718	-				-0.1
107,718	-				-1.0
107,731	-				+0.8
107,731	-				+0.3
107,732	+				+0.3
107,732	+				+1.5
107,733	-				-0.7
107,733	-				+0.1
107,733	-				-1.7
107,736	+				+0.3
107,736	+				-1.3
107,736	+				+0.4
107,736	+				-0.3
107,736	+				+0.4
107,737	-				+0.0
107,737	-				-0.3
107,737	-				-0.8
107,740	+				-1.3
107,741	-				-0.4
107,741	-				-1.3
107,741	-				+0.5
107,741	-				-0.5
107,767	+				+1.9
107,839	+				+0.3
107,882	-				+0.2
107,885	+				+2.9
107,886	-				+2.3
107,886	-				+0.1
107,886	-				+0.8
107,899	+				-1.4
107,899	+				+1.8
107,899	+				+2.1
107,900	-				+1.2
107,902	+				-2.3
107,902	+				-0.1
107,902	+				+1.1
107,903	-				-0.3
107,903	-				-0.8
107,903	-				+0.0
107,942	+				+0.0
108,006	-				-0.5
108,059	+				-0.5
108,069	+				-0.0
108,070	-				+0.9
108,071	+				+0.5
108,071	+				+1.1
108,097	-				+0.3
108,112	+				+3.1
108,113	-				+1.0
108,114	+				+0.3
108,120	-				+2.5
108,130	+				-1.5
108,130	+				+0.5
108,131	-				-1.5
108,142	-				+1.2
108,209	+				+0.6
108,483	-		Psyr_0097	0.22	+0.6
108,504	-		Psyr_0097	0.24	+1.5
108,515	+		Psyr_0097	0.24	+0.1
108,516	-		Psyr_0097	0.25	-1.0
108,548	+		Psyr_0097	0.27	+0.3
108,549	-		Psyr_0097	0.27	-0.6