Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3906

Experiment: Manganese (II) chloride tetrahydrate 0.00078125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3905 and Pf6N2E2_3906 are separated by 355 nucleotidesPf6N2E2_3906 and Pf6N2E2_3907 overlap by 1 nucleotidesPf6N2E2_3907 and Pf6N2E2_3908 are separated by 255 nucleotides Pf6N2E2_3905 - Two-component system response regulator OmpR, at 4,538,723 to 4,539,463 _3905 Pf6N2E2_3906 - Transcription accessory protein (S1 RNA-binding domain), at 4,539,819 to 4,542,143 _3906 Pf6N2E2_3907 - Uncharacterized protein, possibly involved in aromatic compounds catabolism, at 4,542,143 to 4,542,526 _3907 Pf6N2E2_3908 - Glutamate--cysteine ligase (EC 6.3.2.2), at 4,542,782 to 4,544,380 _3908 Position (kb) 4539 4540 4541 4542 4543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4539.500 kb on - strandat 4539.500 kb on - strandat 4539.500 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.512 kb on - strandat 4539.531 kb on - strandat 4539.547 kb on - strandat 4539.547 kb on - strandat 4539.547 kb on - strandat 4539.574 kb on - strandat 4539.574 kb on - strandat 4539.610 kb on + strandat 4539.610 kb on + strandat 4539.611 kb on - strandat 4539.611 kb on - strandat 4539.611 kb on - strandat 4539.611 kb on - strandat 4539.612 kb on + strandat 4539.613 kb on - strandat 4539.613 kb on - strandat 4539.613 kb on - strandat 4539.818 kb on + strandat 4539.819 kb on - strandat 4539.860 kb on - strandat 4539.996 kb on + strandat 4540.029 kb on - strandat 4540.123 kb on - strand, within Pf6N2E2_3906at 4540.123 kb on - strand, within Pf6N2E2_3906at 4540.131 kb on + strand, within Pf6N2E2_3906at 4540.131 kb on + strand, within Pf6N2E2_3906at 4540.302 kb on + strand, within Pf6N2E2_3906at 4540.302 kb on + strand, within Pf6N2E2_3906at 4540.302 kb on + strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.303 kb on - strand, within Pf6N2E2_3906at 4540.351 kb on + strand, within Pf6N2E2_3906at 4540.352 kb on - strand, within Pf6N2E2_3906at 4540.352 kb on - strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.355 kb on + strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.356 kb on - strand, within Pf6N2E2_3906at 4540.359 kb on + strand, within Pf6N2E2_3906at 4540.359 kb on + strand, within Pf6N2E2_3906at 4540.359 kb on + strand, within Pf6N2E2_3906at 4540.359 kb on + strand, within Pf6N2E2_3906at 4540.360 kb on - strand, within Pf6N2E2_3906at 4540.360 kb on - strand, within Pf6N2E2_3906at 4540.434 kb on + strand, within Pf6N2E2_3906at 4540.434 kb on + strand, within Pf6N2E2_3906at 4540.668 kb on + strand, within Pf6N2E2_3906at 4540.668 kb on + strand, within Pf6N2E2_3906at 4540.668 kb on + strand, within Pf6N2E2_3906at 4540.668 kb on + strand, within Pf6N2E2_3906at 4540.668 kb on + strand, within Pf6N2E2_3906at 4540.669 kb on - strand, within Pf6N2E2_3906at 4540.669 kb on - strand, within Pf6N2E2_3906at 4540.879 kb on - strand, within Pf6N2E2_3906at 4541.026 kb on - strand, within Pf6N2E2_3906at 4541.126 kb on - strand, within Pf6N2E2_3906at 4541.540 kb on - strand, within Pf6N2E2_3906at 4541.540 kb on - strand, within Pf6N2E2_3906at 4541.540 kb on - strand, within Pf6N2E2_3906at 4541.845 kb on + strand, within Pf6N2E2_3906at 4541.845 kb on + strand, within Pf6N2E2_3906at 4541.846 kb on - strand, within Pf6N2E2_3906at 4541.846 kb on - strand, within Pf6N2E2_3906at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.383 kb on + strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.384 kb on - strand, within Pf6N2E2_3907at 4542.522 kb on + strandat 4542.522 kb on + strandat 4542.522 kb on + strandat 4542.523 kb on - strandat 4542.523 kb on - strandat 4542.524 kb on + strandat 4542.524 kb on + strandat 4542.525 kb on - strandat 4542.549 kb on - strandat 4542.764 kb on + strandat 4542.765 kb on - strandat 4542.984 kb on - strand, within Pf6N2E2_3908at 4543.095 kb on - strand, within Pf6N2E2_3908at 4543.095 kb on - strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.098 kb on + strand, within Pf6N2E2_3908at 4543.099 kb on - strand, within Pf6N2E2_3908

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 0.00078125 M
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4,539,500 - -1.8
4,539,500 - +1.0
4,539,500 - -1.1
4,539,512 - -1.5
4,539,512 - -0.5
4,539,512 - +0.2
4,539,512 - -2.8
4,539,512 - +0.5
4,539,512 - -2.0
4,539,512 - -0.0
4,539,531 - +1.1
4,539,547 - -0.8
4,539,547 - -2.0
4,539,547 - -1.1
4,539,574 - -0.9
4,539,574 - -0.6
4,539,610 + +1.3
4,539,610 + +0.4
4,539,611 - +0.4
4,539,611 - +0.2
4,539,611 - -0.9
4,539,611 - -1.1
4,539,612 + -0.8
4,539,613 - -0.9
4,539,613 - -2.4
4,539,613 - +1.0
4,539,818 + -0.8
4,539,819 - -2.1
4,539,860 - -1.0
4,539,996 + -1.8
4,540,029 - -1.0
4,540,123 - Pf6N2E2_3906 0.13 -0.7
4,540,123 - Pf6N2E2_3906 0.13 -1.5
4,540,131 + Pf6N2E2_3906 0.13 -1.5
4,540,131 + Pf6N2E2_3906 0.13 -1.7
4,540,302 + Pf6N2E2_3906 0.21 -0.7
4,540,302 + Pf6N2E2_3906 0.21 -0.3
4,540,302 + Pf6N2E2_3906 0.21 -0.2
4,540,303 - Pf6N2E2_3906 0.21 -0.4
4,540,303 - Pf6N2E2_3906 0.21 +0.7
4,540,303 - Pf6N2E2_3906 0.21 -1.8
4,540,303 - Pf6N2E2_3906 0.21 -1.6
4,540,303 - Pf6N2E2_3906 0.21 -0.6
4,540,303 - Pf6N2E2_3906 0.21 -0.2
4,540,303 - Pf6N2E2_3906 0.21 -1.3
4,540,351 + Pf6N2E2_3906 0.23 -0.4
4,540,352 - Pf6N2E2_3906 0.23 -1.0
4,540,352 - Pf6N2E2_3906 0.23 -0.5
4,540,355 + Pf6N2E2_3906 0.23 -0.2
4,540,355 + Pf6N2E2_3906 0.23 +0.4
4,540,355 + Pf6N2E2_3906 0.23 -1.9
4,540,355 + Pf6N2E2_3906 0.23 +0.0
4,540,355 + Pf6N2E2_3906 0.23 -0.3
4,540,355 + Pf6N2E2_3906 0.23 -0.7
4,540,355 + Pf6N2E2_3906 0.23 -0.7
4,540,355 + Pf6N2E2_3906 0.23 +1.2
4,540,355 + Pf6N2E2_3906 0.23 -0.6
4,540,355 + Pf6N2E2_3906 0.23 -1.7
4,540,356 - Pf6N2E2_3906 0.23 -0.4
4,540,356 - Pf6N2E2_3906 0.23 -1.9
4,540,356 - Pf6N2E2_3906 0.23 -1.3
4,540,356 - Pf6N2E2_3906 0.23 -0.1
4,540,356 - Pf6N2E2_3906 0.23 +1.3
4,540,356 - Pf6N2E2_3906 0.23 -1.4
4,540,359 + Pf6N2E2_3906 0.23 +1.1
4,540,359 + Pf6N2E2_3906 0.23 -1.0
4,540,359 + Pf6N2E2_3906 0.23 -1.6
4,540,359 + Pf6N2E2_3906 0.23 -0.2
4,540,360 - Pf6N2E2_3906 0.23 -2.1
4,540,360 - Pf6N2E2_3906 0.23 +0.1
4,540,434 + Pf6N2E2_3906 0.26 -0.5
4,540,434 + Pf6N2E2_3906 0.26 -2.0
4,540,668 + Pf6N2E2_3906 0.37 -1.4
4,540,668 + Pf6N2E2_3906 0.37 -0.7
4,540,668 + Pf6N2E2_3906 0.37 -1.5
4,540,668 + Pf6N2E2_3906 0.37 -0.2
4,540,668 + Pf6N2E2_3906 0.37 -2.0
4,540,669 - Pf6N2E2_3906 0.37 -0.8
4,540,669 - Pf6N2E2_3906 0.37 -1.1
4,540,879 - Pf6N2E2_3906 0.46 -2.9
4,541,026 - Pf6N2E2_3906 0.52 -0.5
4,541,126 - Pf6N2E2_3906 0.56 -2.2
4,541,540 - Pf6N2E2_3906 0.74 -1.0
4,541,540 - Pf6N2E2_3906 0.74 -1.8
4,541,540 - Pf6N2E2_3906 0.74 -1.8
4,541,845 + Pf6N2E2_3906 0.87 -1.0
4,541,845 + Pf6N2E2_3906 0.87 +0.2
4,541,846 - Pf6N2E2_3906 0.87 -1.8
4,541,846 - Pf6N2E2_3906 0.87 -2.3
4,542,383 + Pf6N2E2_3907 0.62 -0.5
4,542,383 + Pf6N2E2_3907 0.62 -0.0
4,542,383 + Pf6N2E2_3907 0.62 +1.3
4,542,383 + Pf6N2E2_3907 0.62 -1.4
4,542,383 + Pf6N2E2_3907 0.62 +0.4
4,542,384 - Pf6N2E2_3907 0.63 +0.1
4,542,384 - Pf6N2E2_3907 0.63 -0.2
4,542,384 - Pf6N2E2_3907 0.63 -2.4
4,542,384 - Pf6N2E2_3907 0.63 +0.5
4,542,384 - Pf6N2E2_3907 0.63 -2.7
4,542,384 - Pf6N2E2_3907 0.63 -0.9
4,542,522 + -0.4
4,542,522 + +1.8
4,542,522 + +0.6
4,542,523 - +1.2
4,542,523 - -1.7
4,542,524 + -0.5
4,542,524 + -1.0
4,542,525 - +0.4
4,542,549 - +1.0
4,542,764 + +0.9
4,542,765 - -0.5
4,542,984 - Pf6N2E2_3908 0.13 -2.3
4,543,095 - Pf6N2E2_3908 0.20 -1.2
4,543,095 - Pf6N2E2_3908 0.20 -1.0
4,543,098 + Pf6N2E2_3908 0.20 -1.9
4,543,098 + Pf6N2E2_3908 0.20 -2.2
4,543,098 + Pf6N2E2_3908 0.20 -3.3
4,543,098 + Pf6N2E2_3908 0.20 -1.4
4,543,099 - Pf6N2E2_3908 0.20 -0.8

Or see this region's nucleotide sequence