Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3294 and Dsui_3295 are separated by 138 nucleotides Dsui_3295 and Dsui_3296 are separated by 371 nucleotides
Dsui_3294: Dsui_3294 - isocitrate dehydrogenase kinase/phosphatase, at 3,533,484 to 3,535,331
_3294
Dsui_3295: Dsui_3295 - isocitrate dehydrogenase, NADP-dependent, monomeric type, at 3,535,470 to 3,537,710
_3295
Dsui_3296: Dsui_3296 - isocitrate dehydrogenase, NADP-dependent, prokaryotic type, at 3,538,082 to 3,539,308
_3296
Position (kb)
3535
3536
3537
3538 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3534.476 kb on - strand, within Dsui_3294 at 3534.499 kb on + strand, within Dsui_3294 at 3534.525 kb on + strand, within Dsui_3294 at 3534.543 kb on + strand, within Dsui_3294 at 3534.565 kb on + strand at 3534.567 kb on - strand, within Dsui_3294 at 3534.636 kb on - strand, within Dsui_3294 at 3534.641 kb on - strand, within Dsui_3294 at 3534.800 kb on + strand, within Dsui_3294 at 3534.800 kb on + strand, within Dsui_3294 at 3534.800 kb on + strand at 3534.803 kb on - strand, within Dsui_3294 at 3534.808 kb on - strand, within Dsui_3294 at 3534.808 kb on - strand, within Dsui_3294 at 3534.813 kb on - strand, within Dsui_3294 at 3534.848 kb on + strand at 3534.856 kb on - strand, within Dsui_3294 at 3534.900 kb on + strand at 3534.908 kb on - strand, within Dsui_3294 at 3534.922 kb on + strand, within Dsui_3294 at 3534.941 kb on - strand, within Dsui_3294 at 3534.945 kb on + strand, within Dsui_3294 at 3534.976 kb on + strand at 3534.984 kb on - strand, within Dsui_3294 at 3534.994 kb on - strand, within Dsui_3294 at 3535.014 kb on - strand at 3535.017 kb on + strand, within Dsui_3294 at 3535.019 kb on - strand, within Dsui_3294 at 3535.058 kb on + strand, within Dsui_3294 at 3535.066 kb on - strand, within Dsui_3294 at 3535.104 kb on + strand at 3535.107 kb on - strand, within Dsui_3294 at 3535.107 kb on - strand, within Dsui_3294 at 3535.109 kb on - strand, within Dsui_3294 at 3535.155 kb on + strand at 3535.171 kb on + strand at 3535.324 kb on + strand at 3535.324 kb on + strand at 3535.326 kb on - strand at 3535.328 kb on - strand at 3535.332 kb on - strand at 3535.336 kb on - strand at 3535.453 kb on + strand at 3535.462 kb on + strand at 3535.462 kb on + strand at 3535.462 kb on + strand at 3535.509 kb on + strand at 3535.751 kb on + strand, within Dsui_3295 at 3535.784 kb on + strand, within Dsui_3295 at 3535.784 kb on + strand, within Dsui_3295 at 3535.847 kb on - strand at 3535.860 kb on + strand, within Dsui_3295 at 3536.003 kb on + strand, within Dsui_3295 at 3536.285 kb on + strand, within Dsui_3295 at 3536.561 kb on + strand, within Dsui_3295 at 3536.884 kb on + strand, within Dsui_3295 at 3537.137 kb on + strand, within Dsui_3295 at 3537.316 kb on + strand, within Dsui_3295 at 3537.473 kb on + strand, within Dsui_3295 at 3537.580 kb on + strand at 3537.674 kb on + strand at 3537.725 kb on + strand at 3537.732 kb on + strand at 3537.745 kb on - strand at 3537.928 kb on - strand at 3537.975 kb on - strand at 3538.012 kb on + strand at 3538.056 kb on - strand at 3538.063 kb on - strand at 3538.079 kb on - strand at 3538.086 kb on + strand at 3538.093 kb on + strand at 3538.101 kb on - strand at 3538.110 kb on - strand at 3538.110 kb on - strand at 3538.165 kb on + strand at 3538.202 kb on + strand at 3538.205 kb on - strand at 3538.260 kb on - strand, within Dsui_3296 at 3538.300 kb on + strand, within Dsui_3296 at 3538.308 kb on - strand, within Dsui_3296 at 3538.310 kb on + strand, within Dsui_3296 at 3538.324 kb on + strand, within Dsui_3296 at 3538.344 kb on + strand, within Dsui_3296 at 3538.352 kb on - strand, within Dsui_3296 at 3538.410 kb on + strand, within Dsui_3296 at 3538.418 kb on - strand, within Dsui_3296 at 3538.471 kb on + strand, within Dsui_3296 at 3538.479 kb on - strand, within Dsui_3296 at 3538.499 kb on - strand, within Dsui_3296 at 3538.500 kb on + strand, within Dsui_3296 at 3538.500 kb on + strand, within Dsui_3296 at 3538.508 kb on - strand, within Dsui_3296 at 3538.518 kb on - strand, within Dsui_3296 at 3538.541 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.575 kb on + strand, within Dsui_3296 at 3538.583 kb on - strand, within Dsui_3296 at 3538.583 kb on - strand, within Dsui_3296 at 3538.587 kb on + strand, within Dsui_3296
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 3,534,476 - Dsui_3294 0.54 -0.2 3,534,499 + Dsui_3294 0.55 -0.1 3,534,525 + Dsui_3294 0.56 -0.7 3,534,543 + Dsui_3294 0.57 +0.9 3,534,565 + -0.1 3,534,567 - Dsui_3294 0.59 -1.7 3,534,636 - Dsui_3294 0.62 -1.1 3,534,641 - Dsui_3294 0.63 +0.8 3,534,800 + Dsui_3294 0.71 +0.9 3,534,800 + Dsui_3294 0.71 -0.1 3,534,800 + -0.1 3,534,803 - Dsui_3294 0.71 -0.2 3,534,808 - Dsui_3294 0.72 -0.7 3,534,808 - Dsui_3294 0.72 +0.8 3,534,813 - Dsui_3294 0.72 -2.0 3,534,848 + -0.1 3,534,856 - Dsui_3294 0.74 +0.3 3,534,900 + +1.9 3,534,908 - Dsui_3294 0.77 -1.1 3,534,922 + Dsui_3294 0.78 +0.9 3,534,941 - Dsui_3294 0.79 -0.8 3,534,945 + Dsui_3294 0.79 -1.1 3,534,976 + +1.9 3,534,984 - Dsui_3294 0.81 -0.3 3,534,994 - Dsui_3294 0.82 +0.9 3,535,014 - +0.5 3,535,017 + Dsui_3294 0.83 -0.4 3,535,019 - Dsui_3294 0.83 -0.1 3,535,058 + Dsui_3294 0.85 -0.1 3,535,066 - Dsui_3294 0.86 -0.1 3,535,104 + +0.5 3,535,107 - Dsui_3294 0.88 +1.1 3,535,107 - Dsui_3294 0.88 -0.1 3,535,109 - Dsui_3294 0.88 +0.0 3,535,155 + -0.1 3,535,171 + -1.3 3,535,324 + -0.1 3,535,324 + -0.1 3,535,326 - -0.4 3,535,328 - -0.7 3,535,332 - +0.1 3,535,336 - +2.5 3,535,453 + -1.1 3,535,462 + +4.2 3,535,462 + +1.7 3,535,462 + +3.9 3,535,509 + +1.3 3,535,751 + Dsui_3295 0.13 +1.9 3,535,784 + Dsui_3295 0.14 +3.1 3,535,784 + Dsui_3295 0.14 +1.9 3,535,847 - -0.1 3,535,860 + Dsui_3295 0.17 +1.7 3,536,003 + Dsui_3295 0.24 +2.5 3,536,285 + Dsui_3295 0.36 +1.2 3,536,561 + Dsui_3295 0.49 +0.9 3,536,884 + Dsui_3295 0.63 -0.1 3,537,137 + Dsui_3295 0.74 -0.1 3,537,316 + Dsui_3295 0.82 -0.1 3,537,473 + Dsui_3295 0.89 +2.4 3,537,580 + +3.2 3,537,674 + +0.4 3,537,725 + -0.1 3,537,732 + +0.4 3,537,745 - -0.1 3,537,928 - +1.7 3,537,975 - +0.5 3,538,012 + +0.7 3,538,056 - -0.1 3,538,063 - +0.9 3,538,079 - +1.9 3,538,086 + +0.0 3,538,093 + -1.1 3,538,101 - -0.3 3,538,110 - -0.8 3,538,110 - +0.2 3,538,165 + -0.3 3,538,202 + -1.9 3,538,205 - +2.5 3,538,260 - Dsui_3296 0.15 +0.3 3,538,300 + Dsui_3296 0.18 -0.5 3,538,308 - Dsui_3296 0.18 +0.3 3,538,310 + Dsui_3296 0.19 +0.7 3,538,324 + Dsui_3296 0.20 +1.5 3,538,344 + Dsui_3296 0.21 -0.1 3,538,352 - Dsui_3296 0.22 +1.0 3,538,410 + Dsui_3296 0.27 -0.1 3,538,418 - Dsui_3296 0.27 -0.4 3,538,471 + Dsui_3296 0.32 +0.7 3,538,479 - Dsui_3296 0.32 +0.6 3,538,499 - Dsui_3296 0.34 -1.1 3,538,500 + Dsui_3296 0.34 -0.3 3,538,500 + Dsui_3296 0.34 +0.4 3,538,508 - Dsui_3296 0.35 +0.6 3,538,518 - Dsui_3296 0.36 +1.0 3,538,541 + Dsui_3296 0.37 +2.7 3,538,575 + Dsui_3296 0.40 +0.8 3,538,575 + Dsui_3296 0.40 +0.1 3,538,575 + Dsui_3296 0.40 -0.0 3,538,575 + Dsui_3296 0.40 +0.2 3,538,583 - Dsui_3296 0.41 -0.7 3,538,583 - Dsui_3296 0.41 -0.5 3,538,587 + Dsui_3296 0.41 +0.9
Or see this region's nucleotide sequence