Strain Fitness in Dechlorosoma suillum PS around Dsui_3204

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3203 and Dsui_3204 are separated by 68 nucleotidesDsui_3204 and Dsui_3205 are separated by 90 nucleotidesDsui_3205 and Dsui_3206 are separated by 80 nucleotides Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816 _3203 Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991 _3204 Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735 _3205 Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232 _3206 Position (kb) 3439 3440 3441Strain fitness (log2 ratio) -1 0 1at 3438.906 kb on - strand, within Dsui_3203at 3439.156 kb on + strandat 3439.202 kb on - strand, within Dsui_3203at 3439.326 kb on - strand, within Dsui_3203at 3439.443 kb on + strandat 3439.486 kb on - strand, within Dsui_3203at 3439.513 kb on - strand, within Dsui_3203at 3439.575 kb on - strand, within Dsui_3203at 3439.669 kb on - strand, within Dsui_3203at 3439.676 kb on + strandat 3441.044 kb on - strandat 3441.175 kb on - strand, within Dsui_3205at 3441.175 kb on - strand, within Dsui_3205at 3441.181 kb on - strand, within Dsui_3205at 3441.186 kb on - strand, within Dsui_3205at 3441.339 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.396 kb on - strand, within Dsui_3205at 3441.534 kb on + strandat 3441.534 kb on + strand, within Dsui_3205at 3441.557 kb on - strand, within Dsui_3205at 3441.574 kb on - strand, within Dsui_3205at 3441.614 kb on + strandat 3441.694 kb on - strandat 3441.697 kb on + strandat 3441.697 kb on + strandat 3441.781 kb on - strandat 3441.942 kb on + strand, within Dsui_3206

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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3,438,906 - Dsui_3203 0.22 -1.7
3,439,156 + -0.5
3,439,202 - Dsui_3203 0.47 +0.5
3,439,326 - Dsui_3203 0.58 +0.1
3,439,443 + -0.1
3,439,486 - Dsui_3203 0.72 -0.5
3,439,513 - Dsui_3203 0.74 -0.1
3,439,575 - Dsui_3203 0.79 +0.9
3,439,669 - Dsui_3203 0.87 +0.7
3,439,676 + -0.1
3,441,044 - -1.1
3,441,175 - Dsui_3205 0.14 +1.4
3,441,175 - Dsui_3205 0.14 +0.8
3,441,181 - Dsui_3205 0.15 +1.2
3,441,186 - Dsui_3205 0.16 -0.1
3,441,339 - Dsui_3205 0.39 +0.5
3,441,396 - Dsui_3205 0.48 +0.1
3,441,396 - Dsui_3205 0.48 +0.3
3,441,534 + +0.9
3,441,534 + Dsui_3205 0.69 +0.2
3,441,557 - Dsui_3205 0.73 -0.1
3,441,574 - Dsui_3205 0.75 -0.1
3,441,614 + -1.1
3,441,694 - +0.3
3,441,697 + +0.9
3,441,697 + +0.5
3,441,781 - -0.1
3,441,942 + Dsui_3206 0.30 -1.1

Or see this region's nucleotide sequence