Strain Fitness in Dechlorosoma suillum PS around Dsui_3067

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3066 and Dsui_3067 are separated by 3 nucleotidesDsui_3067 and Dsui_3068 are separated by 94 nucleotidesDsui_3068 and Dsui_3069 are separated by 52 nucleotides Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625 _3066 Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159 _3067 Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724 _3068 Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343 _3069 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -2 -1 0 1at 3282.740 kb on - strandat 3282.783 kb on + strandat 3282.783 kb on + strandat 3283.056 kb on + strand, within Dsui_3066at 3283.056 kb on + strand, within Dsui_3066at 3283.099 kb on - strand, within Dsui_3066at 3283.119 kb on - strand, within Dsui_3066at 3283.252 kb on - strand, within Dsui_3066at 3283.421 kb on + strandat 3283.429 kb on - strand, within Dsui_3066at 3283.429 kb on - strand, within Dsui_3066at 3283.459 kb on + strandat 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.550 kb on + strandat 3283.550 kb on + strandat 3283.580 kb on - strandat 3283.647 kb on - strandat 3283.697 kb on - strand, within Dsui_3067at 3283.725 kb on - strand, within Dsui_3067at 3284.245 kb on + strandat 3284.707 kb on - strandat 3284.753 kb on + strandat 3284.793 kb on + strandat 3284.793 kb on + strandat 3284.796 kb on + strandat 3284.833 kb on + strandat 3284.834 kb on + strand, within Dsui_3069at 3284.855 kb on - strandat 3284.869 kb on + strand, within Dsui_3069at 3284.919 kb on + strand, within Dsui_3069at 3284.927 kb on - strandat 3284.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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3,282,740 - -0.8
3,282,783 + +0.9
3,282,783 + +0.5
3,283,056 + Dsui_3066 0.29 -1.1
3,283,056 + Dsui_3066 0.29 -0.1
3,283,099 - Dsui_3066 0.35 +1.1
3,283,119 - Dsui_3066 0.37 +0.0
3,283,252 - Dsui_3066 0.54 -0.0
3,283,421 + +1.5
3,283,429 - Dsui_3066 0.76 +1.3
3,283,429 - Dsui_3066 0.76 -0.2
3,283,459 + -1.1
3,283,467 - Dsui_3066 0.80 +0.9
3,283,467 - Dsui_3066 0.80 +1.5
3,283,467 - Dsui_3066 0.80 +0.2
3,283,467 - Dsui_3066 0.80 +0.4
3,283,550 + +0.4
3,283,550 + +0.6
3,283,580 - -1.2
3,283,647 - -0.7
3,283,697 - Dsui_3067 0.13 -0.8
3,283,725 - Dsui_3067 0.18 -1.8
3,284,245 + -0.1
3,284,707 - -1.5
3,284,753 + -1.7
3,284,793 + -1.1
3,284,793 + -0.1
3,284,796 + -0.1
3,284,833 + +1.5
3,284,834 + Dsui_3069 0.10 -0.1
3,284,855 - -0.1
3,284,869 + Dsui_3069 0.16 -0.1
3,284,919 + Dsui_3069 0.25 -0.1
3,284,927 - -0.1
3,284,963 - -0.1

Or see this region's nucleotide sequence