Strain Fitness in Dechlorosoma suillum PS around Dsui_2458

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2457 and Dsui_2458 are separated by 11 nucleotidesDsui_2458 and Dsui_2459 are separated by 16 nucleotidesDsui_2459 and Dsui_2460 overlap by 8 nucleotides Dsui_2457: Dsui_2457 - GTP-binding protein LepA, at 2,615,057 to 2,616,850 _2457 Dsui_2458: Dsui_2458 - signal peptidase I, at 2,616,862 to 2,617,650 _2458 Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038 _2459 Dsui_2460: Dsui_2460 - ribonuclease III, at 2,618,031 to 2,618,723 _2460 Position (kb) 2616 2617 2618Strain fitness (log2 ratio) -1 0 1at 2615.880 kb on + strand, within Dsui_2457at 2615.955 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.309 kb on + strand, within Dsui_2457at 2616.379 kb on + strand, within Dsui_2457at 2616.427 kb on + strand, within Dsui_2457at 2616.529 kb on + strand, within Dsui_2457at 2617.649 kb on + strandat 2617.670 kb on - strandat 2617.873 kb on + strand, within Dsui_2459at 2617.887 kb on + strand, within Dsui_2459at 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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2,615,880 + Dsui_2457 0.46 -1.1
2,615,955 + Dsui_2457 0.50 -1.4
2,616,309 + Dsui_2457 0.70 -0.1
2,616,309 + Dsui_2457 0.70 -0.1
2,616,309 + Dsui_2457 0.70 -0.7
2,616,379 + Dsui_2457 0.74 -1.1
2,616,427 + Dsui_2457 0.76 +0.5
2,616,529 + Dsui_2457 0.82 -0.1
2,617,649 + -0.1
2,617,670 - -0.1
2,617,873 + Dsui_2459 0.55 +0.0
2,617,887 + Dsui_2459 0.59 -1.1
2,618,023 + +0.3
2,618,023 + +1.5
2,618,023 + +0.2
2,618,031 - -0.1
2,618,031 - -0.1
2,618,031 - -1.1
2,618,031 - -1.1

Or see this region's nucleotide sequence