Strain Fitness in Dechlorosoma suillum PS around Dsui_2381

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2379 and Dsui_2380 are separated by 27 nucleotidesDsui_2380 and Dsui_2381 are separated by 19 nucleotidesDsui_2381 and Dsui_2382 are separated by 137 nucleotides Dsui_2379: Dsui_2379 - phosphoserine phosphatase SerB, at 2,527,533 to 2,528,375 _2379 Dsui_2380: Dsui_2380 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,528,403 to 2,528,945 _2380 Dsui_2381: Dsui_2381 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,528,965 to 2,530,041 _2381 Dsui_2382: Dsui_2382 - PAS domain S-box, at 2,530,179 to 2,532,755 _2382 Position (kb) 2528 2529 2530 2531Strain fitness (log2 ratio) -1 0 1 2at 2528.402 kb on - strandat 2528.402 kb on - strandat 2528.549 kb on - strand, within Dsui_2380at 2528.832 kb on - strand, within Dsui_2380at 2528.879 kb on - strand, within Dsui_2380at 2528.928 kb on - strandat 2528.935 kb on - strandat 2530.155 kb on + strandat 2530.155 kb on + strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.163 kb on - strandat 2530.198 kb on + strandat 2530.289 kb on - strandat 2530.471 kb on - strand, within Dsui_2382at 2530.471 kb on - strand, within Dsui_2382at 2530.613 kb on + strandat 2530.837 kb on - strand, within Dsui_2382at 2530.846 kb on - strand, within Dsui_2382at 2530.934 kb on + strandat 2530.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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2,528,402 - +0.7
2,528,402 - +0.5
2,528,549 - Dsui_2380 0.27 +0.1
2,528,832 - Dsui_2380 0.79 +0.2
2,528,879 - Dsui_2380 0.88 -0.1
2,528,928 - +0.3
2,528,935 - +0.5
2,530,155 + -1.1
2,530,155 + -0.1
2,530,163 - -0.1
2,530,163 - -0.1
2,530,163 - +1.4
2,530,163 - -0.1
2,530,163 - +1.2
2,530,163 - -0.1
2,530,198 + +2.0
2,530,289 - +0.4
2,530,471 - Dsui_2382 0.11 -1.7
2,530,471 - Dsui_2382 0.11 -0.1
2,530,613 + -0.1
2,530,837 - Dsui_2382 0.26 +0.9
2,530,846 - Dsui_2382 0.26 -0.4
2,530,934 + +2.2
2,530,942 - -0.1

Or see this region's nucleotide sequence