Strain Fitness in Dechlorosoma suillum PS around Dsui_2369

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2367 and Dsui_2368 are separated by 54 nucleotidesDsui_2368 and Dsui_2369 are separated by 60 nucleotidesDsui_2369 and Dsui_2370 are separated by 16 nucleotides Dsui_2367: Dsui_2367 - RNA methyltransferase, TrmH family, group 1, at 2,518,622 to 2,519,401 _2367 Dsui_2368: Dsui_2368 - serine O-acetyltransferase, at 2,519,456 to 2,520,211 _2368 Dsui_2369: Dsui_2369 - iron-sulfur cluster assembly transcription factor IscR, at 2,520,272 to 2,520,748 _2369 Dsui_2370: Dsui_2370 - cysteine desulfurase family protein, at 2,520,765 to 2,521,922 _2370 Position (kb) 2520 2521Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2519.306 kb on + strand, within Dsui_2367at 2519.370 kb on - strandat 2519.374 kb on + strandat 2519.450 kb on + strandat 2520.052 kb on + strand, within Dsui_2368at 2520.052 kb on + strand, within Dsui_2368at 2520.052 kb on + strand, within Dsui_2368at 2520.123 kb on + strand, within Dsui_2368at 2520.168 kb on - strandat 2520.220 kb on + strandat 2520.227 kb on + strandat 2520.388 kb on + strand, within Dsui_2369at 2520.393 kb on + strand, within Dsui_2369at 2520.629 kb on + strand, within Dsui_2369at 2520.639 kb on + strand, within Dsui_2369at 2520.673 kb on + strand, within Dsui_2369at 2520.673 kb on + strand, within Dsui_2369at 2520.721 kb on + strandat 2520.731 kb on + strandat 2520.731 kb on + strandat 2520.766 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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2,519,306 + Dsui_2367 0.88 -0.1
2,519,370 - +1.9
2,519,374 + +1.3
2,519,450 + +0.2
2,520,052 + Dsui_2368 0.79 -3.3
2,520,052 + Dsui_2368 0.79 -2.3
2,520,052 + Dsui_2368 0.79 -1.0
2,520,123 + Dsui_2368 0.88 +0.7
2,520,168 - -1.1
2,520,220 + +0.3
2,520,227 + -0.4
2,520,388 + Dsui_2369 0.24 -0.1
2,520,393 + Dsui_2369 0.25 -2.7
2,520,629 + Dsui_2369 0.75 -1.7
2,520,639 + Dsui_2369 0.77 -2.5
2,520,673 + Dsui_2369 0.84 +0.1
2,520,673 + Dsui_2369 0.84 -1.8
2,520,721 + +1.0
2,520,731 + -1.1
2,520,731 + -1.9
2,520,766 + -1.1

Or see this region's nucleotide sequence