Strain Fitness in Dechlorosoma suillum PS around Dsui_2209

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2208 and Dsui_2209 are separated by 69 nucleotidesDsui_2209 and Dsui_2210 are separated by 188 nucleotides Dsui_2208: Dsui_2208 - citrate lyase beta subunit, at 2,347,100 to 2,348,107 _2208 Dsui_2209: Dsui_2209 - malate dehydrogenase, at 2,348,177 to 2,349,163 _2209 Dsui_2210: Dsui_2210 - transcriptional regulator, at 2,349,352 to 2,350,092 _2210 Position (kb) 2348 2349 2350Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2347.408 kb on - strand, within Dsui_2208at 2347.454 kb on - strand, within Dsui_2208at 2347.510 kb on + strand, within Dsui_2208at 2347.611 kb on - strand, within Dsui_2208at 2347.703 kb on - strand, within Dsui_2208at 2347.744 kb on + strand, within Dsui_2208at 2347.754 kb on + strand, within Dsui_2208at 2347.885 kb on - strand, within Dsui_2208at 2347.984 kb on - strand, within Dsui_2208at 2347.989 kb on - strand, within Dsui_2208at 2348.044 kb on - strandat 2348.091 kb on + strandat 2348.103 kb on + strandat 2349.289 kb on - strandat 2349.338 kb on + strandat 2349.338 kb on + strandat 2349.348 kb on + strandat 2349.368 kb on + strandat 2349.375 kb on + strandat 2349.383 kb on + strandat 2349.428 kb on + strand, within Dsui_2210at 2349.439 kb on + strand, within Dsui_2210at 2349.506 kb on + strand, within Dsui_2210at 2349.589 kb on + strand, within Dsui_2210at 2349.702 kb on + strand, within Dsui_2210at 2349.703 kb on + strand, within Dsui_2210at 2349.862 kb on + strand, within Dsui_2210at 2349.977 kb on + strand, within Dsui_2210at 2349.987 kb on + strand, within Dsui_2210at 2350.081 kb on + strandat 2350.088 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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2,347,408 - Dsui_2208 0.31 +0.5
2,347,454 - Dsui_2208 0.35 -0.7
2,347,510 + Dsui_2208 0.41 +1.9
2,347,611 - Dsui_2208 0.51 -0.8
2,347,703 - Dsui_2208 0.60 +0.1
2,347,744 + Dsui_2208 0.64 -2.1
2,347,754 + Dsui_2208 0.65 -1.1
2,347,885 - Dsui_2208 0.78 -0.3
2,347,984 - Dsui_2208 0.88 +0.0
2,347,989 - Dsui_2208 0.88 -0.7
2,348,044 - +0.5
2,348,091 + -0.1
2,348,103 + -0.2
2,349,289 - -0.1
2,349,338 + -0.4
2,349,338 + -0.3
2,349,348 + +0.8
2,349,368 + +2.7
2,349,375 + +2.7
2,349,383 + +1.9
2,349,428 + Dsui_2210 0.10 +2.9
2,349,439 + Dsui_2210 0.12 +3.8
2,349,506 + Dsui_2210 0.21 -0.1
2,349,589 + Dsui_2210 0.32 +3.9
2,349,702 + Dsui_2210 0.47 +2.5
2,349,703 + Dsui_2210 0.47 +2.3
2,349,862 + Dsui_2210 0.69 +4.2
2,349,977 + Dsui_2210 0.84 +0.6
2,349,987 + Dsui_2210 0.86 +3.0
2,350,081 + -0.7
2,350,088 + -0.5

Or see this region's nucleotide sequence