Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2161 and Dsui_2162 are separated by 133 nucleotides Dsui_2162 and Dsui_2163 are separated by 282 nucleotides Dsui_2163 and Dsui_2164 are separated by 146 nucleotides
Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365
_2161
Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074
_2162
Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773
_2163
Dsui_2164: Dsui_2164 - signal transduction histidine kinase, at 2,298,920 to 2,300,968
_2164
Position (kb)
2298
2299 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2297.359 kb on + strand at 2297.411 kb on - strand at 2297.417 kb on - strand at 2297.440 kb on + strand at 2297.538 kb on - strand at 2297.553 kb on + strand at 2297.617 kb on + strand, within Dsui_2162 at 2297.622 kb on + strand, within Dsui_2162 at 2297.622 kb on + strand, within Dsui_2162 at 2297.628 kb on + strand, within Dsui_2162 at 2297.641 kb on - strand, within Dsui_2162 at 2297.712 kb on + strand, within Dsui_2162 at 2297.712 kb on + strand, within Dsui_2162 at 2297.777 kb on - strand, within Dsui_2162 at 2297.777 kb on - strand, within Dsui_2162 at 2297.839 kb on - strand, within Dsui_2162 at 2297.902 kb on + strand, within Dsui_2162 at 2297.902 kb on + strand, within Dsui_2162 at 2297.910 kb on - strand, within Dsui_2162 at 2297.910 kb on - strand, within Dsui_2162 at 2297.975 kb on - strand at 2298.093 kb on + strand at 2298.144 kb on + strand at 2298.144 kb on + strand at 2298.147 kb on - strand at 2298.147 kb on - strand at 2298.151 kb on + strand at 2298.206 kb on + strand at 2298.342 kb on + strand at 2298.360 kb on + strand at 2298.488 kb on - strand, within Dsui_2163 at 2298.494 kb on + strand, within Dsui_2163 at 2298.524 kb on - strand at 2298.716 kb on + strand, within Dsui_2163 at 2298.771 kb on - strand at 2298.819 kb on - strand at 2298.964 kb on + strand at 2299.084 kb on - strand at 2299.200 kb on - strand at 2299.217 kb on + strand at 2299.280 kb on - strand at 2299.282 kb on + strand at 2299.282 kb on + strand, within Dsui_2164 at 2299.290 kb on - strand at 2299.488 kb on + strand at 2299.657 kb on + strand at 2299.665 kb on - strand, within Dsui_2164 at 2299.708 kb on - strand, within Dsui_2164
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 2,297,359 + -0.1 2,297,411 - -0.3 2,297,417 - -0.1 2,297,440 + -1.7 2,297,538 - +0.6 2,297,553 + -0.8 2,297,617 + Dsui_2162 0.20 -1.1 2,297,622 + Dsui_2162 0.21 -0.4 2,297,622 + Dsui_2162 0.21 -2.3 2,297,628 + Dsui_2162 0.22 -0.7 2,297,641 - Dsui_2162 0.25 -0.8 2,297,712 + Dsui_2162 0.37 -1.4 2,297,712 + Dsui_2162 0.37 -2.4 2,297,777 - Dsui_2162 0.48 +0.9 2,297,777 - Dsui_2162 0.48 +0.6 2,297,839 - Dsui_2162 0.59 -0.8 2,297,902 + Dsui_2162 0.70 +0.9 2,297,902 + Dsui_2162 0.70 +1.5 2,297,910 - Dsui_2162 0.71 +0.8 2,297,910 - Dsui_2162 0.71 -0.1 2,297,975 - +2.2 2,298,093 + -1.1 2,298,144 + -0.1 2,298,144 + -1.4 2,298,147 - -0.1 2,298,147 - -1.1 2,298,151 + -0.1 2,298,206 + -0.1 2,298,342 + -0.7 2,298,360 + +2.4 2,298,488 - Dsui_2163 0.31 -1.1 2,298,494 + Dsui_2163 0.33 -1.1 2,298,524 - -1.4 2,298,716 + Dsui_2163 0.86 -1.3 2,298,771 - -0.1 2,298,819 - -0.1 2,298,964 + -0.5 2,299,084 - -0.1 2,299,200 - -0.1 2,299,217 + -0.7 2,299,280 - +0.1 2,299,282 + -0.1 2,299,282 + Dsui_2164 0.18 +0.1 2,299,290 - -0.5 2,299,488 + +0.9 2,299,657 + -1.1 2,299,665 - Dsui_2164 0.36 +0.1 2,299,708 - Dsui_2164 0.38 +0.2
Or see this region's nucleotide sequence