Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1971 and Dsui_1972 are separated by 52 nucleotides Dsui_1972 and Dsui_1973 overlap by 4 nucleotides
Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778
_1971
Dsui_1972: Dsui_1972 - lytic murein transglycosylase B, at 2,079,831 to 2,080,862
_1972
Dsui_1973: Dsui_1973 - transglutaminase-like enzyme, predicted cysteine protease, at 2,080,859 to 2,082,865
_1973
Position (kb)
2079
2080
2081 Strain fitness (log2 ratio)
-2
-1
0
1 at 2078.869 kb on - strand at 2078.869 kb on - strand at 2078.872 kb on + strand at 2079.030 kb on - strand, within Dsui_1971 at 2079.035 kb on - strand, within Dsui_1971 at 2079.069 kb on + strand, within Dsui_1971 at 2079.077 kb on - strand, within Dsui_1971 at 2079.085 kb on + strand, within Dsui_1971 at 2079.097 kb on + strand, within Dsui_1971 at 2079.147 kb on + strand, within Dsui_1971 at 2079.148 kb on + strand, within Dsui_1971 at 2079.155 kb on - strand at 2079.185 kb on + strand, within Dsui_1971 at 2079.209 kb on - strand, within Dsui_1971 at 2079.227 kb on + strand, within Dsui_1971 at 2079.345 kb on + strand, within Dsui_1971 at 2079.353 kb on - strand, within Dsui_1971 at 2079.377 kb on + strand, within Dsui_1971 at 2079.415 kb on - strand, within Dsui_1971 at 2079.458 kb on - strand, within Dsui_1971 at 2079.480 kb on + strand, within Dsui_1971 at 2079.488 kb on + strand, within Dsui_1971 at 2079.496 kb on - strand, within Dsui_1971 at 2079.574 kb on - strand, within Dsui_1971 at 2079.584 kb on - strand, within Dsui_1971 at 2079.635 kb on - strand, within Dsui_1971 at 2079.703 kb on + strand at 2079.709 kb on + strand at 2079.725 kb on - strand at 2079.813 kb on + strand at 2079.935 kb on + strand at 2080.081 kb on + strand at 2080.086 kb on + strand at 2080.094 kb on - strand, within Dsui_1972 at 2080.108 kb on + strand, within Dsui_1972 at 2080.155 kb on + strand, within Dsui_1972 at 2080.201 kb on - strand, within Dsui_1972 at 2080.277 kb on - strand, within Dsui_1972 at 2080.280 kb on - strand, within Dsui_1972 at 2080.319 kb on - strand, within Dsui_1972 at 2080.319 kb on - strand, within Dsui_1972 at 2080.366 kb on + strand, within Dsui_1972 at 2080.510 kb on + strand at 2080.713 kb on + strand, within Dsui_1972 at 2080.952 kb on + strand at 2080.960 kb on - strand at 2080.978 kb on - strand at 2080.980 kb on + strand at 2080.993 kb on - strand at 2081.065 kb on + strand at 2081.148 kb on - strand, within Dsui_1973 at 2081.161 kb on + strand at 2081.343 kb on + strand, within Dsui_1973 at 2081.362 kb on + strand, within Dsui_1973 at 2081.371 kb on - strand, within Dsui_1973 at 2081.371 kb on - strand at 2081.694 kb on - strand, within Dsui_1973 at 2081.694 kb on - strand, within Dsui_1973 at 2081.701 kb on - strand, within Dsui_1973 at 2081.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 2,078,869 - -1.5 2,078,869 - -1.7 2,078,872 + -0.0 2,079,030 - Dsui_1971 0.24 -0.3 2,079,035 - Dsui_1971 0.25 -0.2 2,079,069 + Dsui_1971 0.28 -0.4 2,079,077 - Dsui_1971 0.29 -2.1 2,079,085 + Dsui_1971 0.30 -0.4 2,079,097 + Dsui_1971 0.31 -0.6 2,079,147 + Dsui_1971 0.36 +1.5 2,079,148 + Dsui_1971 0.36 -0.7 2,079,155 - -0.1 2,079,185 + Dsui_1971 0.40 -0.4 2,079,209 - Dsui_1971 0.42 -0.1 2,079,227 + Dsui_1971 0.44 +1.1 2,079,345 + Dsui_1971 0.56 -0.5 2,079,353 - Dsui_1971 0.57 +1.5 2,079,377 + Dsui_1971 0.59 -1.1 2,079,415 - Dsui_1971 0.63 +0.4 2,079,458 - Dsui_1971 0.67 -0.8 2,079,480 + Dsui_1971 0.70 -0.4 2,079,488 + Dsui_1971 0.71 +0.1 2,079,496 - Dsui_1971 0.71 -0.6 2,079,574 - Dsui_1971 0.79 +1.2 2,079,584 - Dsui_1971 0.80 +0.4 2,079,635 - Dsui_1971 0.85 -0.3 2,079,703 + +0.1 2,079,709 + -1.7 2,079,725 - -0.4 2,079,813 + +0.5 2,079,935 + -0.1 2,080,081 + +0.9 2,080,086 + +1.4 2,080,094 - Dsui_1972 0.25 -0.1 2,080,108 + Dsui_1972 0.27 +1.5 2,080,155 + Dsui_1972 0.31 +0.3 2,080,201 - Dsui_1972 0.36 -0.4 2,080,277 - Dsui_1972 0.43 -0.2 2,080,280 - Dsui_1972 0.44 -0.7 2,080,319 - Dsui_1972 0.47 -0.5 2,080,319 - Dsui_1972 0.47 -0.8 2,080,366 + Dsui_1972 0.52 -1.5 2,080,510 + -1.7 2,080,713 + Dsui_1972 0.85 -0.9 2,080,952 + -2.4 2,080,960 - -0.6 2,080,978 - +0.4 2,080,980 + -0.1 2,080,993 - +0.6 2,081,065 + +0.5 2,081,148 - Dsui_1973 0.14 +0.2 2,081,161 + +0.5 2,081,343 + Dsui_1973 0.24 -0.1 2,081,362 + Dsui_1973 0.25 -0.6 2,081,371 - Dsui_1973 0.26 +1.3 2,081,371 - +0.7 2,081,694 - Dsui_1973 0.42 +1.2 2,081,694 - Dsui_1973 0.42 +0.2 2,081,701 - Dsui_1973 0.42 -1.7 2,081,859 + -0.1
Or see this region's nucleotide sequence