Strain Fitness in Dechlorosoma suillum PS around Dsui_1765

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1763 and Dsui_1764 are separated by 34 nucleotidesDsui_1764 and Dsui_1765 overlap by 11 nucleotidesDsui_1765 and Dsui_1766 overlap by 8 nucleotidesDsui_1766 and Dsui_1767 are separated by 94 nucleotides Dsui_1763: Dsui_1763 - subfamily IIIC HAD-superfamily phosphatase, at 1,850,968 to 1,852,668 _1763 Dsui_1764: Dsui_1764 - acyl carrier protein, at 1,852,703 to 1,852,915 _1764 Dsui_1765: Dsui_1765 - acetyltransferase, ribosomal protein N-acetylase, at 1,852,905 to 1,853,489 _1765 Dsui_1766: Dsui_1766 - hypothetical protein, at 1,853,482 to 1,853,910 _1766 Dsui_1767: Dsui_1767 - methyltransferase family protein, at 1,854,005 to 1,854,658 _1767 Position (kb) 1852 1853 1854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1851.922 kb on - strand, within Dsui_1763at 1852.009 kb on + strand, within Dsui_1763at 1852.009 kb on + strand, within Dsui_1763at 1852.017 kb on - strand, within Dsui_1763at 1852.035 kb on - strand, within Dsui_1763at 1852.167 kb on + strand, within Dsui_1763at 1852.175 kb on - strand, within Dsui_1763at 1852.272 kb on + strand, within Dsui_1763at 1852.327 kb on - strandat 1852.377 kb on + strand, within Dsui_1763at 1852.551 kb on - strandat 1852.646 kb on + strandat 1852.646 kb on + strandat 1852.651 kb on + strandat 1852.651 kb on + strandat 1852.654 kb on - strandat 1852.654 kb on - strandat 1852.701 kb on + strandat 1852.773 kb on - strand, within Dsui_1764at 1852.785 kb on + strand, within Dsui_1764at 1852.785 kb on + strand, within Dsui_1764at 1852.785 kb on + strand, within Dsui_1764at 1852.785 kb on + strand, within Dsui_1764at 1852.785 kb on + strand, within Dsui_1764at 1852.793 kb on - strandat 1852.793 kb on - strand, within Dsui_1764at 1852.793 kb on - strand, within Dsui_1764at 1852.826 kb on - strand, within Dsui_1764at 1852.847 kb on - strand, within Dsui_1764at 1852.867 kb on - strand, within Dsui_1764at 1853.026 kb on - strand, within Dsui_1765at 1853.069 kb on - strand, within Dsui_1765at 1853.075 kb on - strand, within Dsui_1765at 1853.123 kb on + strand, within Dsui_1765at 1853.131 kb on - strand, within Dsui_1765at 1853.248 kb on - strand, within Dsui_1765at 1853.276 kb on + strand, within Dsui_1765at 1853.286 kb on + strand, within Dsui_1765at 1853.327 kb on - strand, within Dsui_1765at 1853.332 kb on - strand, within Dsui_1765at 1853.392 kb on + strand, within Dsui_1765at 1853.521 kb on + strandat 1853.522 kb on - strandat 1853.544 kb on - strand, within Dsui_1766at 1853.624 kb on + strand, within Dsui_1766at 1853.866 kb on + strand, within Dsui_1766at 1853.928 kb on + strandat 1853.932 kb on - strandat 1853.984 kb on + strandat 1854.001 kb on + strandat 1854.001 kb on + strandat 1854.050 kb on + strandat 1854.050 kb on + strandat 1854.106 kb on + strand, within Dsui_1767at 1854.149 kb on + strand, within Dsui_1767at 1854.247 kb on + strand, within Dsui_1767at 1854.272 kb on + strand, within Dsui_1767at 1854.437 kb on + strand, within Dsui_1767at 1854.476 kb on + strand, within Dsui_1767

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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1,851,922 - Dsui_1763 0.56 +0.1
1,852,009 + Dsui_1763 0.61 -1.1
1,852,009 + Dsui_1763 0.61 +1.0
1,852,017 - Dsui_1763 0.62 -0.0
1,852,035 - Dsui_1763 0.63 +1.0
1,852,167 + Dsui_1763 0.70 +0.5
1,852,175 - Dsui_1763 0.71 +1.3
1,852,272 + Dsui_1763 0.77 +1.2
1,852,327 - -0.0
1,852,377 + Dsui_1763 0.83 +1.6
1,852,551 - +1.6
1,852,646 + +0.5
1,852,646 + +0.6
1,852,651 + +0.3
1,852,651 + +0.7
1,852,654 - -0.4
1,852,654 - +1.2
1,852,701 + +0.8
1,852,773 - Dsui_1764 0.33 +0.8
1,852,785 + Dsui_1764 0.38 +1.3
1,852,785 + Dsui_1764 0.38 -0.7
1,852,785 + Dsui_1764 0.38 +0.4
1,852,785 + Dsui_1764 0.38 +0.2
1,852,785 + Dsui_1764 0.38 +0.5
1,852,793 - -0.0
1,852,793 - Dsui_1764 0.42 -0.0
1,852,793 - Dsui_1764 0.42 +0.4
1,852,826 - Dsui_1764 0.58 -0.0
1,852,847 - Dsui_1764 0.68 +1.4
1,852,867 - Dsui_1764 0.77 -3.4
1,853,026 - Dsui_1765 0.21 +1.1
1,853,069 - Dsui_1765 0.28 +2.1
1,853,075 - Dsui_1765 0.29 -0.0
1,853,123 + Dsui_1765 0.37 +1.0
1,853,131 - Dsui_1765 0.39 -1.0
1,853,248 - Dsui_1765 0.59 +0.7
1,853,276 + Dsui_1765 0.63 +0.4
1,853,286 + Dsui_1765 0.65 +1.4
1,853,327 - Dsui_1765 0.72 +0.6
1,853,332 - Dsui_1765 0.73 -0.0
1,853,392 + Dsui_1765 0.83 +0.6
1,853,521 + +1.2
1,853,522 - -0.6
1,853,544 - Dsui_1766 0.14 -1.8
1,853,624 + Dsui_1766 0.33 +1.1
1,853,866 + Dsui_1766 0.90 +0.1
1,853,928 + +1.5
1,853,932 - -0.0
1,853,984 + +0.8
1,854,001 + +0.9
1,854,001 + +0.8
1,854,050 + +0.5
1,854,050 + +0.6
1,854,106 + Dsui_1767 0.15 +1.0
1,854,149 + Dsui_1767 0.22 +1.0
1,854,247 + Dsui_1767 0.37 -0.0
1,854,272 + Dsui_1767 0.41 +1.3
1,854,437 + Dsui_1767 0.66 +0.2
1,854,476 + Dsui_1767 0.72 +1.2

Or see this region's nucleotide sequence