Strain Fitness in Dechlorosoma suillum PS around Dsui_1589

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1588 and Dsui_1589 overlap by 1 nucleotidesDsui_1589 and Dsui_1590 are separated by 13 nucleotidesDsui_1590 and Dsui_1591 are separated by 111 nucleotides Dsui_1588: Dsui_1588 - aminoglycoside phosphotransferase, at 1,668,898 to 1,669,899 _1588 Dsui_1589: Dsui_1589 - Nucleoside-diphosphate-sugar pyrophosphorylase family protein, at 1,669,899 to 1,670,582 _1589 Dsui_1590: Dsui_1590 - hypothetical protein, at 1,670,596 to 1,670,868 _1590 Dsui_1591: Dsui_1591 - Xaa-Pro aminopeptidase, at 1,670,980 to 1,672,281 _1591 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -3 -2 -1 0 1at 1668.916 kb on + strandat 1668.921 kb on + strandat 1669.060 kb on + strand, within Dsui_1588at 1669.073 kb on + strand, within Dsui_1588at 1669.146 kb on + strand, within Dsui_1588at 1669.176 kb on + strand, within Dsui_1588at 1669.184 kb on + strand, within Dsui_1588at 1669.192 kb on - strandat 1669.240 kb on - strand, within Dsui_1588at 1669.261 kb on + strand, within Dsui_1588at 1669.332 kb on - strand, within Dsui_1588at 1669.469 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.533 kb on - strandat 1669.533 kb on - strandat 1669.610 kb on - strand, within Dsui_1588at 1669.790 kb on + strand, within Dsui_1588at 1669.884 kb on + strandat 1669.961 kb on + strandat 1670.068 kb on - strand, within Dsui_1589at 1670.075 kb on + strand, within Dsui_1589at 1670.110 kb on - strandat 1670.186 kb on + strand, within Dsui_1589at 1670.238 kb on + strand, within Dsui_1589at 1670.479 kb on + strand, within Dsui_1589at 1670.483 kb on + strand, within Dsui_1589at 1670.500 kb on + strand, within Dsui_1589at 1670.576 kb on + strandat 1670.807 kb on - strandat 1670.814 kb on + strand, within Dsui_1590at 1670.819 kb on + strand, within Dsui_1590at 1670.819 kb on + strand, within Dsui_1590at 1670.850 kb on + strandat 1670.850 kb on + strandat 1670.850 kb on + strandat 1670.858 kb on - strandat 1670.858 kb on - strandat 1670.914 kb on - strandat 1671.246 kb on + strand, within Dsui_1591at 1671.555 kb on + strand, within Dsui_1591at 1671.555 kb on + strand, within Dsui_1591

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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1,668,916 + -1.8
1,668,921 + +0.4
1,669,060 + Dsui_1588 0.16 +0.8
1,669,073 + Dsui_1588 0.17 +0.0
1,669,146 + Dsui_1588 0.25 +1.0
1,669,176 + Dsui_1588 0.28 +1.5
1,669,184 + Dsui_1588 0.29 +0.9
1,669,192 - +0.5
1,669,240 - Dsui_1588 0.34 +1.2
1,669,261 + Dsui_1588 0.36 +0.2
1,669,332 - Dsui_1588 0.43 +1.1
1,669,469 + Dsui_1588 0.57 +0.6
1,669,525 + Dsui_1588 0.63 +1.3
1,669,525 + Dsui_1588 0.63 +1.5
1,669,525 + Dsui_1588 0.63 +1.3
1,669,525 + Dsui_1588 0.63 +0.3
1,669,533 - +0.0
1,669,533 - +0.0
1,669,610 - Dsui_1588 0.71 +0.0
1,669,790 + Dsui_1588 0.89 +1.3
1,669,884 + +1.0
1,669,961 + +0.0
1,670,068 - Dsui_1589 0.25 -2.2
1,670,075 + Dsui_1589 0.26 -1.0
1,670,110 - +0.0
1,670,186 + Dsui_1589 0.42 -1.6
1,670,238 + Dsui_1589 0.50 -3.7
1,670,479 + Dsui_1589 0.85 -2.6
1,670,483 + Dsui_1589 0.85 -2.0
1,670,500 + Dsui_1589 0.88 -2.8
1,670,576 + +1.3
1,670,807 - +0.0
1,670,814 + Dsui_1590 0.80 +0.3
1,670,819 + Dsui_1590 0.82 -0.4
1,670,819 + Dsui_1590 0.82 +1.6
1,670,850 + +0.0
1,670,850 + +0.6
1,670,850 + -0.1
1,670,858 - +1.7
1,670,858 - +0.0
1,670,914 - +0.2
1,671,246 + Dsui_1591 0.20 +0.0
1,671,555 + Dsui_1591 0.44 -1.0
1,671,555 + Dsui_1591 0.44 -0.6

Or see this region's nucleotide sequence