Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1181 and Dsui_1182 are separated by 72 nucleotides Dsui_1182 and Dsui_1183 overlap by 4 nucleotides Dsui_1183 and Dsui_1184 are separated by 120 nucleotides Dsui_1184 and Dsui_1185 are separated by 39 nucleotides
Dsui_1181: Dsui_1181 - signal transduction histidine kinase, at 1,234,133 to 1,235,533
_1181
Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862
_1182
Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032
_1183
Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470
_1184
Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866
_1185
Position (kb)
1235
1236
1237 Strain fitness (log2 ratio)
-1
0
1 at 1234.648 kb on + strand, within Dsui_1181 at 1234.683 kb on - strand, within Dsui_1181 at 1234.683 kb on - strand, within Dsui_1181 at 1234.683 kb on - strand, within Dsui_1181 at 1234.684 kb on - strand, within Dsui_1181 at 1234.714 kb on + strand, within Dsui_1181 at 1234.714 kb on + strand, within Dsui_1181 at 1234.729 kb on - strand, within Dsui_1181 at 1234.759 kb on + strand, within Dsui_1181 at 1234.825 kb on + strand, within Dsui_1181 at 1234.845 kb on + strand, within Dsui_1181 at 1234.847 kb on + strand, within Dsui_1181 at 1234.860 kb on + strand at 1234.894 kb on + strand, within Dsui_1181 at 1234.989 kb on - strand, within Dsui_1181 at 1235.245 kb on + strand, within Dsui_1181 at 1235.303 kb on - strand, within Dsui_1181 at 1235.321 kb on + strand, within Dsui_1181 at 1235.352 kb on - strand, within Dsui_1181 at 1235.409 kb on + strand at 1235.416 kb on - strand at 1235.604 kb on + strand at 1235.604 kb on + strand at 1235.604 kb on + strand at 1235.604 kb on + strand at 1235.604 kb on + strand at 1235.611 kb on + strand at 1235.612 kb on - strand at 1237.078 kb on - strand at 1237.104 kb on + strand at 1237.112 kb on - strand at 1237.116 kb on + strand at 1237.123 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.462 kb on - strand at 1237.493 kb on - strand at 1237.517 kb on + strand at 1237.525 kb on - strand at 1237.541 kb on - strand at 1237.552 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 1,234,648 + Dsui_1181 0.37 +0.8 1,234,683 - Dsui_1181 0.39 +0.1 1,234,683 - Dsui_1181 0.39 +0.2 1,234,683 - Dsui_1181 0.39 +0.8 1,234,684 - Dsui_1181 0.39 +1.6 1,234,714 + Dsui_1181 0.41 +0.8 1,234,714 + Dsui_1181 0.41 +0.0 1,234,729 - Dsui_1181 0.43 -0.1 1,234,759 + Dsui_1181 0.45 +0.9 1,234,825 + Dsui_1181 0.49 +1.3 1,234,845 + Dsui_1181 0.51 -0.7 1,234,847 + Dsui_1181 0.51 +1.0 1,234,860 + +0.0 1,234,894 + Dsui_1181 0.54 +1.0 1,234,989 - Dsui_1181 0.61 +0.6 1,235,245 + Dsui_1181 0.79 -0.7 1,235,303 - Dsui_1181 0.84 +0.8 1,235,321 + Dsui_1181 0.85 -0.5 1,235,352 - Dsui_1181 0.87 +0.6 1,235,409 + +0.0 1,235,416 - -0.2 1,235,604 + -1.6 1,235,604 + +0.0 1,235,604 + -0.4 1,235,604 + +0.2 1,235,604 + +0.1 1,235,611 + -0.2 1,235,612 - +0.2 1,237,078 - +1.0 1,237,104 + -0.2 1,237,112 - +0.2 1,237,116 + +0.8 1,237,123 - +0.6 1,237,124 - +1.5 1,237,124 - -0.7 1,237,124 - -0.2 1,237,462 - -1.0 1,237,493 - +0.6 1,237,517 + -1.0 1,237,525 - +1.0 1,237,541 - +0.8 1,237,552 - Dsui_1185 0.12 -0.4 1,237,615 - Dsui_1185 0.29 +0.9 1,237,615 - Dsui_1185 0.29 +0.9 1,237,615 - Dsui_1185 0.29 +0.2 1,237,852 + +0.8
Or see this region's nucleotide sequence