Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1146 and Dsui_1147 are separated by 194 nucleotides Dsui_1147 and Dsui_1148 are separated by 10 nucleotides Dsui_1148 and Dsui_1149 are separated by 178 nucleotides
Dsui_1146: Dsui_1146 - high-affinity nickel permease, at 1,201,097 to 1,201,906
_1146
Dsui_1147: Dsui_1147 - PAS domain S-box, at 1,202,101 to 1,203,474
_1147
Dsui_1148: Dsui_1148 - putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain, at 1,203,485 to 1,203,973
_1148
Dsui_1149: Dsui_1149 - Zn-dependent protease with chaperone function, at 1,204,152 to 1,205,033
_1149
Position (kb) 1202
1203
1204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1201.183 kb on + strand, within Dsui_1146 at 1201.285 kb on - strand, within Dsui_1146 at 1201.344 kb on + strand, within Dsui_1146 at 1201.457 kb on - strand, within Dsui_1146 at 1201.603 kb on + strand, within Dsui_1146 at 1201.619 kb on - strand, within Dsui_1146 at 1201.621 kb on + strand, within Dsui_1146 at 1201.639 kb on + strand, within Dsui_1146 at 1201.740 kb on + strand, within Dsui_1146 at 1201.776 kb on + strand, within Dsui_1146 at 1201.864 kb on - strand at 1201.910 kb on - strand at 1202.057 kb on + strand at 1202.226 kb on - strand at 1202.270 kb on + strand, within Dsui_1147 at 1202.361 kb on + strand, within Dsui_1147 at 1202.366 kb on + strand, within Dsui_1147 at 1202.366 kb on + strand, within Dsui_1147 at 1202.366 kb on + strand, within Dsui_1147 at 1202.366 kb on + strand, within Dsui_1147 at 1202.374 kb on - strand, within Dsui_1147 at 1202.381 kb on + strand, within Dsui_1147 at 1202.433 kb on + strand, within Dsui_1147 at 1202.481 kb on + strand at 1202.656 kb on - strand, within Dsui_1147 at 1202.728 kb on + strand, within Dsui_1147 at 1202.728 kb on + strand, within Dsui_1147 at 1202.736 kb on - strand, within Dsui_1147 at 1202.796 kb on + strand, within Dsui_1147 at 1202.810 kb on + strand, within Dsui_1147 at 1202.904 kb on - strand, within Dsui_1147 at 1203.203 kb on + strand, within Dsui_1147 at 1203.295 kb on + strand at 1203.302 kb on - strand, within Dsui_1147 at 1203.313 kb on - strand, within Dsui_1147 at 1203.315 kb on + strand, within Dsui_1147 at 1203.346 kb on + strand at 1203.630 kb on + strand, within Dsui_1148 at 1203.650 kb on - strand, within Dsui_1148 at 1203.846 kb on - strand, within Dsui_1148 at 1203.890 kb on - strand, within Dsui_1148 at 1204.109 kb on + strand at 1204.427 kb on + strand, within Dsui_1149 at 1204.435 kb on - strand, within Dsui_1149 at 1204.447 kb on - strand, within Dsui_1149
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 1,201,183 + Dsui_1146 0.11 +0.4 1,201,285 - Dsui_1146 0.23 +1.6 1,201,344 + Dsui_1146 0.30 +0.4 1,201,457 - Dsui_1146 0.44 -0.8 1,201,603 + Dsui_1146 0.62 -1.3 1,201,619 - Dsui_1146 0.64 -0.8 1,201,621 + Dsui_1146 0.65 -0.1 1,201,639 + Dsui_1146 0.67 -0.6 1,201,740 + Dsui_1146 0.79 -1.0 1,201,776 + Dsui_1146 0.84 +0.9 1,201,864 - +0.8 1,201,910 - +0.5 1,202,057 + +0.0 1,202,226 - +1.3 1,202,270 + Dsui_1147 0.12 -0.3 1,202,361 + Dsui_1147 0.19 +1.3 1,202,366 + Dsui_1147 0.19 -0.7 1,202,366 + Dsui_1147 0.19 +1.4 1,202,366 + Dsui_1147 0.19 +1.6 1,202,366 + Dsui_1147 0.19 +3.5 1,202,374 - Dsui_1147 0.20 +1.0 1,202,381 + Dsui_1147 0.20 +0.9 1,202,433 + Dsui_1147 0.24 +2.4 1,202,481 + +1.6 1,202,656 - Dsui_1147 0.40 -1.5 1,202,728 + Dsui_1147 0.46 +1.1 1,202,728 + Dsui_1147 0.46 -0.3 1,202,736 - Dsui_1147 0.46 +0.6 1,202,796 + Dsui_1147 0.51 -0.3 1,202,810 + Dsui_1147 0.52 -1.0 1,202,904 - Dsui_1147 0.58 +0.9 1,203,203 + Dsui_1147 0.80 +0.3 1,203,295 + +0.0 1,203,302 - Dsui_1147 0.87 -0.5 1,203,313 - Dsui_1147 0.88 +0.2 1,203,315 + Dsui_1147 0.88 +1.6 1,203,346 + +0.1 1,203,630 + Dsui_1148 0.30 +0.6 1,203,650 - Dsui_1148 0.34 +0.3 1,203,846 - Dsui_1148 0.74 +0.7 1,203,890 - Dsui_1148 0.83 -1.0 1,204,109 + +1.1 1,204,427 + Dsui_1149 0.31 -0.7 1,204,435 - Dsui_1149 0.32 +0.9 1,204,447 - Dsui_1149 0.33 -2.8
Or see this region's nucleotide sequence