Strain Fitness in Dechlorosoma suillum PS around Dsui_1095

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1093 and Dsui_1094 overlap by 4 nucleotidesDsui_1094 and Dsui_1095 overlap by 4 nucleotidesDsui_1095 and Dsui_1096 are separated by 265 nucleotides Dsui_1093: Dsui_1093 - hypothetical protein, at 1,132,993 to 1,133,337 _1093 Dsui_1094: Dsui_1094 - shikimate kinase, at 1,133,334 to 1,133,906 _1094 Dsui_1095: Dsui_1095 - 3-dehydroquinate synthase, at 1,133,903 to 1,134,997 _1095 Dsui_1096: Dsui_1096 - glutamate synthase family protein, at 1,135,263 to 1,139,960 _1096 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -2 -1 0 1at 1132.909 kb on - strandat 1132.915 kb on + strandat 1132.978 kb on + strandat 1133.033 kb on - strand, within Dsui_1093at 1133.066 kb on + strand, within Dsui_1093at 1133.066 kb on + strand, within Dsui_1093at 1133.110 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.144 kb on + strandat 1133.190 kb on + strand, within Dsui_1093at 1133.190 kb on + strand, within Dsui_1093at 1133.223 kb on + strand, within Dsui_1093at 1133.784 kb on + strand, within Dsui_1094at 1133.858 kb on + strandat 1135.017 kb on + strandat 1135.038 kb on - strandat 1135.038 kb on - strandat 1135.088 kb on - strandat 1135.112 kb on - strandat 1135.148 kb on + strandat 1135.181 kb on - strandat 1135.265 kb on + strandat 1135.265 kb on + strandat 1135.265 kb on + strandat 1135.270 kb on + strandat 1135.273 kb on - strandat 1135.273 kb on - strandat 1135.449 kb on - strandat 1135.566 kb on - strandat 1135.847 kb on + strand, within Dsui_1096at 1135.883 kb on + strand, within Dsui_1096at 1135.914 kb on + strand, within Dsui_1096at 1135.932 kb on - strand, within Dsui_1096

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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1,132,909 - -0.2
1,132,915 + +0.0
1,132,978 + +1.0
1,133,033 - Dsui_1093 0.12 +0.1
1,133,066 + Dsui_1093 0.21 +1.0
1,133,066 + Dsui_1093 0.21 -0.6
1,133,110 + Dsui_1093 0.34 +0.0
1,133,134 + Dsui_1093 0.41 +0.6
1,133,134 + Dsui_1093 0.41 +0.7
1,133,134 + Dsui_1093 0.41 -0.4
1,133,134 + Dsui_1093 0.41 -0.0
1,133,144 + +0.0
1,133,190 + Dsui_1093 0.57 +0.9
1,133,190 + Dsui_1093 0.57 -2.3
1,133,223 + Dsui_1093 0.67 +1.1
1,133,784 + Dsui_1094 0.79 -0.8
1,133,858 + +0.8
1,135,017 + +0.5
1,135,038 - +0.3
1,135,038 - +0.9
1,135,088 - +0.0
1,135,112 - +0.7
1,135,148 + -0.1
1,135,181 - -1.0
1,135,265 + +0.0
1,135,265 + -1.0
1,135,265 + +0.0
1,135,270 + +0.0
1,135,273 - -1.0
1,135,273 - +0.0
1,135,449 - -1.0
1,135,566 - +0.0
1,135,847 + Dsui_1096 0.12 -2.3
1,135,883 + Dsui_1096 0.13 +0.0
1,135,914 + Dsui_1096 0.14 +0.0
1,135,932 - Dsui_1096 0.14 +0.0

Or see this region's nucleotide sequence