Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0956 and Dsui_0957 are separated by 132 nucleotides Dsui_0957 and Dsui_0958 are separated by 64 nucleotides Dsui_0958 and Dsui_0959 are separated by 212 nucleotides Dsui_0959 and Dsui_0960 are separated by 9 nucleotides
Dsui_0956: Dsui_0956 - nitrogenase molybdenum-iron protein alpha chain, at 981,731 to 983,173
_0956
Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826
_0957
Dsui_0958: Dsui_0958 - ferredoxin, at 984,891 to 985,238
_0958
Dsui_0959: Dsui_0959 - hypothetical protein, at 985,451 to 985,690
_0959
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Position (kb) 983
984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 982.351 kb on + strand, within Dsui_0956 at 982.599 kb on + strand, within Dsui_0956 at 982.613 kb on + strand, within Dsui_0956 at 982.623 kb on + strand, within Dsui_0956 at 982.896 kb on + strand, within Dsui_0956 at 982.904 kb on - strand, within Dsui_0956 at 983.099 kb on + strand at 983.159 kb on + strand at 983.177 kb on - strand at 983.205 kb on + strand at 983.231 kb on + strand at 983.239 kb on - strand at 983.273 kb on - strand at 983.530 kb on + strand, within Dsui_0957 at 983.555 kb on + strand, within Dsui_0957 at 983.574 kb on + strand, within Dsui_0957 at 983.596 kb on + strand, within Dsui_0957 at 983.740 kb on - strand, within Dsui_0957 at 983.815 kb on - strand, within Dsui_0957 at 983.846 kb on + strand, within Dsui_0957 at 983.902 kb on + strand, within Dsui_0957 at 984.026 kb on + strand, within Dsui_0957 at 984.044 kb on - strand, within Dsui_0957 at 984.178 kb on - strand, within Dsui_0957 at 984.188 kb on + strand, within Dsui_0957 at 984.369 kb on - strand, within Dsui_0957 at 984.395 kb on - strand at 984.416 kb on + strand, within Dsui_0957 at 984.446 kb on - strand, within Dsui_0957 at 984.531 kb on - strand at 984.576 kb on - strand, within Dsui_0957 at 984.579 kb on + strand at 984.731 kb on - strand at 984.738 kb on + strand at 984.738 kb on + strand at 984.857 kb on - strand at 984.913 kb on + strand at 984.931 kb on - strand, within Dsui_0958 at 984.967 kb on - strand, within Dsui_0958 at 985.068 kb on + strand, within Dsui_0958 at 985.073 kb on + strand, within Dsui_0958 at 985.327 kb on + strand at 985.487 kb on - strand, within Dsui_0959 at 985.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 982,351 + Dsui_0956 0.43 -0.0 982,599 + Dsui_0956 0.60 -0.0 982,613 + Dsui_0956 0.61 -1.3 982,623 + Dsui_0956 0.62 -1.8 982,896 + Dsui_0956 0.81 -2.8 982,904 - Dsui_0956 0.81 -0.0 983,099 + -0.0 983,159 + -0.0 983,177 - -2.7 983,205 + -0.6 983,231 + -0.0 983,239 - -0.4 983,273 - -1.0 983,530 + Dsui_0957 0.15 -2.8 983,555 + Dsui_0957 0.16 -1.0 983,574 + Dsui_0957 0.18 -1.6 983,596 + Dsui_0957 0.19 -0.0 983,740 - Dsui_0957 0.29 -0.0 983,815 - Dsui_0957 0.33 -1.6 983,846 + Dsui_0957 0.36 -2.3 983,902 + Dsui_0957 0.39 -1.0 984,026 + Dsui_0957 0.47 -2.0 984,044 - Dsui_0957 0.49 +2.3 984,178 - Dsui_0957 0.57 -2.7 984,188 + Dsui_0957 0.58 -1.3 984,369 - Dsui_0957 0.70 -2.5 984,395 - -1.0 984,416 + Dsui_0957 0.73 -3.8 984,446 - Dsui_0957 0.75 -2.5 984,531 - -0.0 984,576 - Dsui_0957 0.83 -0.0 984,579 + -0.0 984,731 - -0.0 984,738 + -1.0 984,738 + -2.7 984,857 - -1.0 984,913 + -0.6 984,931 - Dsui_0958 0.11 +0.4 984,967 - Dsui_0958 0.22 +2.0 985,068 + Dsui_0958 0.51 -0.4 985,073 + Dsui_0958 0.52 +1.3 985,327 + -0.3 985,487 - Dsui_0959 0.15 +0.7 985,739 + +1.6
Or see this region's nucleotide sequence