Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0942 and Dsui_0943 are separated by 333 nucleotides Dsui_0943 and Dsui_0944 are separated by 44 nucleotides Dsui_0944 and Dsui_0945 are separated by 156 nucleotides Dsui_0945 and Dsui_0946 are separated by 10 nucleotides
Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366
_0942
Dsui_0943: Dsui_0943 - nitrogenase cofactor biosynthesis protein NifB, at 971,700 to 973,223
_0943
Dsui_0944: Dsui_0944 - putative NADH:ubiquinone oxidoreductase, subunit RnfB, at 973,268 to 973,483
_0944
Dsui_0945: Dsui_0945 - Iron-sulfur cluster assembly accessory protein, at 973,640 to 974,056
_0945
Dsui_0946: Dsui_0946 - putative nitrogen fixation protein FixT, at 974,067 to 974,561
_0946
Position (kb) 971
972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.853 kb on - strand at 970.954 kb on + strand, within Dsui_0942 at 970.962 kb on - strand, within Dsui_0942 at 970.977 kb on + strand, within Dsui_0942 at 971.009 kb on + strand, within Dsui_0942 at 971.038 kb on + strand at 971.104 kb on - strand, within Dsui_0942 at 971.214 kb on - strand, within Dsui_0942 at 971.284 kb on + strand, within Dsui_0942 at 971.635 kb on - strand at 972.132 kb on + strand, within Dsui_0943 at 972.137 kb on + strand, within Dsui_0943 at 972.235 kb on + strand, within Dsui_0943 at 972.239 kb on + strand, within Dsui_0943 at 972.317 kb on - strand, within Dsui_0943 at 972.442 kb on + strand, within Dsui_0943 at 972.549 kb on - strand, within Dsui_0943 at 972.573 kb on - strand, within Dsui_0943 at 972.863 kb on - strand, within Dsui_0943 at 972.925 kb on + strand, within Dsui_0943 at 972.933 kb on - strand, within Dsui_0943 at 973.044 kb on + strand, within Dsui_0943 at 973.044 kb on + strand, within Dsui_0943 at 973.052 kb on - strand, within Dsui_0943 at 973.052 kb on - strand, within Dsui_0943 at 973.125 kb on + strand at 973.148 kb on + strand at 973.148 kb on + strand at 973.171 kb on + strand at 973.179 kb on - strand at 973.227 kb on - strand at 973.255 kb on - strand at 973.373 kb on + strand, within Dsui_0944 at 973.417 kb on + strand, within Dsui_0944 at 973.536 kb on + strand at 973.556 kb on - strand at 973.580 kb on - strand at 973.588 kb on + strand at 973.588 kb on + strand at 973.596 kb on + strand at 973.816 kb on + strand, within Dsui_0945 at 973.864 kb on + strand, within Dsui_0945 at 973.907 kb on - strand, within Dsui_0945 at 974.081 kb on - strand at 974.207 kb on - strand, within Dsui_0946
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 970,853 - -1.0 970,954 + Dsui_0942 0.28 +0.2 970,962 - Dsui_0942 0.29 +1.3 970,977 + Dsui_0942 0.32 -1.0 971,009 + Dsui_0942 0.37 -0.1 971,038 + -0.0 971,104 - Dsui_0942 0.54 -0.7 971,214 - Dsui_0942 0.73 +1.6 971,284 + Dsui_0942 0.85 -1.6 971,635 - +0.2 972,132 + Dsui_0943 0.28 -0.0 972,137 + Dsui_0943 0.29 -0.0 972,235 + Dsui_0943 0.35 -2.6 972,239 + Dsui_0943 0.35 -2.3 972,317 - Dsui_0943 0.40 -1.7 972,442 + Dsui_0943 0.49 -2.0 972,549 - Dsui_0943 0.56 -1.0 972,573 - Dsui_0943 0.57 -2.6 972,863 - Dsui_0943 0.76 -1.0 972,925 + Dsui_0943 0.80 +0.6 972,933 - Dsui_0943 0.81 +0.4 973,044 + Dsui_0943 0.88 -0.2 973,044 + Dsui_0943 0.88 +0.5 973,052 - Dsui_0943 0.89 -1.1 973,052 - Dsui_0943 0.89 -1.0 973,125 + -0.6 973,148 + +0.4 973,148 + -0.5 973,171 + -1.0 973,179 - +0.7 973,227 - -0.3 973,255 - +0.5 973,373 + Dsui_0944 0.49 -2.8 973,417 + Dsui_0944 0.69 -0.0 973,536 + +0.8 973,556 - -0.4 973,580 - -0.7 973,588 + +1.0 973,588 + -0.4 973,596 + +0.5 973,816 + Dsui_0945 0.42 -0.0 973,864 + Dsui_0945 0.54 +0.2 973,907 - Dsui_0945 0.64 -0.0 974,081 - -1.3 974,207 - Dsui_0946 0.28 -2.2
Or see this region's nucleotide sequence