Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0899 and Dsui_0900 are separated by 27 nucleotides Dsui_0900 and Dsui_0901 are separated by 23 nucleotides Dsui_0901 and Dsui_0902 are separated by 20 nucleotides Dsui_0902 and Dsui_0903 overlap by 4 nucleotides
Dsui_0899: Dsui_0899 - D-alanyl-D-alanine carboxypeptidase, at 917,330 to 918,499
_0899
Dsui_0900: Dsui_0900 - branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 918,527 to 919,390
_0900
Dsui_0901: Dsui_0901 - hypothetical protein, at 919,414 to 919,713
_0901
Dsui_0902: Dsui_0902 - lipoate-protein ligase B, at 919,734 to 920,354
_0902
Dsui_0903: Dsui_0903 - lipoate synthase, at 920,351 to 921,298
_0903
Position (kb) 919
920 Strain fitness (log2 ratio) -1
0
1
2 at 918.463 kb on - strand at 918.477 kb on + strand at 918.477 kb on + strand at 918.485 kb on - strand at 918.514 kb on - strand at 918.550 kb on + strand at 918.696 kb on + strand, within Dsui_0900 at 918.696 kb on + strand, within Dsui_0900 at 918.714 kb on - strand, within Dsui_0900 at 918.782 kb on + strand, within Dsui_0900 at 918.870 kb on + strand, within Dsui_0900 at 918.977 kb on - strand, within Dsui_0900 at 919.020 kb on + strand, within Dsui_0900 at 919.101 kb on - strand, within Dsui_0900 at 919.119 kb on + strand, within Dsui_0900 at 919.214 kb on + strand, within Dsui_0900 at 919.225 kb on - strand, within Dsui_0900 at 919.320 kb on + strand at 919.384 kb on + strand at 919.476 kb on + strand, within Dsui_0901 at 919.618 kb on + strand, within Dsui_0901
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 918,463 - -0.0 918,477 + -0.7 918,477 + -0.2 918,485 - +0.4 918,514 - -1.0 918,550 + +0.8 918,696 + Dsui_0900 0.20 +0.9 918,696 + Dsui_0900 0.20 -0.0 918,714 - Dsui_0900 0.22 +0.6 918,782 + Dsui_0900 0.30 +0.1 918,870 + Dsui_0900 0.40 +0.8 918,977 - Dsui_0900 0.52 -0.7 919,020 + Dsui_0900 0.57 +1.2 919,101 - Dsui_0900 0.66 +0.1 919,119 + Dsui_0900 0.69 +2.3 919,214 + Dsui_0900 0.80 +0.6 919,225 - Dsui_0900 0.81 +1.6 919,320 + +0.2 919,384 + +0.1 919,476 + Dsui_0901 0.21 +1.3 919,618 + Dsui_0901 0.68 +2.3
Or see this region's nucleotide sequence