Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0548 and Dsui_0549 overlap by 1 nucleotides Dsui_0549 and Dsui_0550 are separated by 240 nucleotides Dsui_0550 and Dsui_0551 overlap by 8 nucleotides
Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365
_0548
Dsui_0549: Dsui_0549 - queuosine biosynthesis protein QueC, at 552,365 to 553,054
_0549
Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752
_0550
Dsui_0551: Dsui_0551 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, at 554,745 to 556,130
_0551
Position (kb) 553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 552.306 kb on - strand at 552.487 kb on + strand at 552.551 kb on + strand, within Dsui_0549 at 552.559 kb on - strand, within Dsui_0549 at 552.591 kb on - strand, within Dsui_0549 at 552.619 kb on + strand at 552.702 kb on + strand at 552.705 kb on - strand, within Dsui_0549 at 552.717 kb on + strand at 552.717 kb on + strand at 552.730 kb on - strand, within Dsui_0549 at 552.745 kb on - strand, within Dsui_0549 at 552.768 kb on - strand, within Dsui_0549 at 552.808 kb on + strand, within Dsui_0549 at 552.862 kb on - strand at 552.955 kb on + strand at 553.058 kb on - strand at 553.068 kb on - strand at 553.114 kb on + strand at 553.192 kb on + strand at 553.219 kb on + strand at 553.219 kb on + strand at 553.227 kb on - strand at 553.229 kb on + strand at 553.231 kb on + strand at 553.357 kb on + strand at 553.363 kb on + strand at 553.418 kb on + strand at 553.481 kb on + strand, within Dsui_0550 at 553.595 kb on - strand, within Dsui_0550 at 553.598 kb on + strand, within Dsui_0550 at 553.606 kb on - strand, within Dsui_0550 at 553.606 kb on - strand, within Dsui_0550 at 553.711 kb on + strand, within Dsui_0550 at 553.723 kb on + strand, within Dsui_0550 at 553.731 kb on - strand, within Dsui_0550 at 553.804 kb on - strand, within Dsui_0550 at 553.810 kb on + strand, within Dsui_0550 at 553.861 kb on + strand, within Dsui_0550 at 553.878 kb on + strand, within Dsui_0550 at 553.886 kb on - strand, within Dsui_0550 at 554.048 kb on - strand at 554.159 kb on - strand, within Dsui_0550 at 554.205 kb on - strand at 554.305 kb on + strand, within Dsui_0550 at 554.445 kb on + strand, within Dsui_0550 at 554.527 kb on + strand, within Dsui_0550 at 554.626 kb on + strand at 554.634 kb on - strand at 554.672 kb on - strand at 554.679 kb on + strand at 554.687 kb on - strand at 554.749 kb on - strand at 554.817 kb on + strand at 554.870 kb on + strand at 554.889 kb on - strand, within Dsui_0551 at 554.980 kb on + strand, within Dsui_0551 at 555.068 kb on - strand, within Dsui_0551 at 555.085 kb on - strand, within Dsui_0551 at 555.150 kb on - strand, within Dsui_0551 at 555.155 kb on - strand, within Dsui_0551 at 555.176 kb on - strand, within Dsui_0551 at 555.185 kb on - strand at 555.248 kb on + strand, within Dsui_0551 at 555.358 kb on - strand, within Dsui_0551 at 555.484 kb on + strand at 555.507 kb on + strand at 555.533 kb on + strand, within Dsui_0551 at 555.578 kb on - strand, within Dsui_0551 at 555.640 kb on - strand, within Dsui_0551
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 552,306 - +0.0 552,487 + -1.0 552,551 + Dsui_0549 0.27 -1.8 552,559 - Dsui_0549 0.28 +2.0 552,591 - Dsui_0549 0.33 +0.2 552,619 + +0.0 552,702 + -1.0 552,705 - Dsui_0549 0.49 -0.6 552,717 + +0.0 552,717 + +2.0 552,730 - Dsui_0549 0.53 +0.3 552,745 - Dsui_0549 0.55 +0.0 552,768 - Dsui_0549 0.58 -0.0 552,808 + Dsui_0549 0.64 +0.6 552,862 - -1.0 552,955 + +0.0 553,058 - -2.0 553,068 - +2.4 553,114 + -1.6 553,192 + -1.0 553,219 + -1.6 553,219 + -1.3 553,227 - +1.0 553,229 + +2.8 553,231 + +0.2 553,357 + +0.0 553,363 + -1.0 553,418 + -1.6 553,481 + Dsui_0550 0.13 -1.0 553,595 - Dsui_0550 0.21 -1.3 553,598 + Dsui_0550 0.21 -1.8 553,606 - Dsui_0550 0.21 -2.3 553,606 - Dsui_0550 0.21 -3.1 553,711 + Dsui_0550 0.29 -2.6 553,723 + Dsui_0550 0.29 -0.6 553,731 - Dsui_0550 0.30 +0.0 553,804 - Dsui_0550 0.35 -1.6 553,810 + Dsui_0550 0.35 +0.0 553,861 + Dsui_0550 0.39 -3.0 553,878 + Dsui_0550 0.40 -1.8 553,886 - Dsui_0550 0.41 -2.3 554,048 - -1.0 554,159 - Dsui_0550 0.59 -1.6 554,205 - +0.0 554,305 + Dsui_0550 0.69 -2.0 554,445 + Dsui_0550 0.79 -2.8 554,527 + Dsui_0550 0.84 +1.6 554,626 + -2.3 554,634 - +0.0 554,672 - -1.2 554,679 + -2.5 554,687 - -2.0 554,749 - -2.6 554,817 + -1.6 554,870 + -1.8 554,889 - Dsui_0551 0.10 -1.0 554,980 + Dsui_0551 0.17 -1.0 555,068 - Dsui_0551 0.23 -2.0 555,085 - Dsui_0551 0.25 -2.6 555,150 - Dsui_0551 0.29 -3.4 555,155 - Dsui_0551 0.30 -1.0 555,176 - Dsui_0551 0.31 -0.6 555,185 - -1.0 555,248 + Dsui_0551 0.36 -2.6 555,358 - Dsui_0551 0.44 -0.6 555,484 + +0.0 555,507 + -1.0 555,533 + Dsui_0551 0.57 -2.8 555,578 - Dsui_0551 0.60 +0.0 555,640 - Dsui_0551 0.65 +0.0
Or see this region's nucleotide sequence