Strain Fitness in Dechlorosoma suillum PS around Dsui_0542

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0541 and Dsui_0542 are separated by 117 nucleotidesDsui_0542 and Dsui_0543 are separated by 228 nucleotides Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094 _0541 Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705 _0542 Dsui_0543: Dsui_0543 - malic enzyme, at 547,934 to 550,210 _0543 Position (kb) 546 547 548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.537 kb on - strand, within Dsui_0541at 545.556 kb on + strand, within Dsui_0541at 545.564 kb on - strand, within Dsui_0541at 545.612 kb on - strand, within Dsui_0541at 545.612 kb on - strand, within Dsui_0541at 545.650 kb on - strand, within Dsui_0541at 545.671 kb on - strand, within Dsui_0541at 545.671 kb on - strand, within Dsui_0541at 545.671 kb on - strand, within Dsui_0541at 545.682 kb on - strand, within Dsui_0541at 545.682 kb on - strand, within Dsui_0541at 545.697 kb on - strand, within Dsui_0541at 545.733 kb on + strandat 545.738 kb on + strand, within Dsui_0541at 545.799 kb on - strand, within Dsui_0541at 545.861 kb on + strandat 545.886 kb on - strand, within Dsui_0541at 545.922 kb on - strand, within Dsui_0541at 546.037 kb on - strandat 546.076 kb on + strandat 546.079 kb on - strandat 546.084 kb on - strandat 546.084 kb on - strandat 546.175 kb on + strandat 546.225 kb on + strandat 546.225 kb on + strandat 546.233 kb on + strandat 546.233 kb on + strandat 546.238 kb on + strandat 546.241 kb on - strandat 546.241 kb on - strandat 546.241 kb on - strandat 546.241 kb on - strandat 546.241 kb on - strandat 546.385 kb on + strandat 546.393 kb on - strand, within Dsui_0542at 546.747 kb on + strand, within Dsui_0542at 546.755 kb on - strand, within Dsui_0542at 546.757 kb on + strand, within Dsui_0542at 546.783 kb on + strand, within Dsui_0542at 546.846 kb on + strand, within Dsui_0542at 546.900 kb on + strand, within Dsui_0542at 546.900 kb on + strand, within Dsui_0542at 546.950 kb on + strand, within Dsui_0542at 546.970 kb on + strand, within Dsui_0542at 547.002 kb on + strandat 547.049 kb on + strand, within Dsui_0542at 547.131 kb on - strand, within Dsui_0542at 547.262 kb on + strand, within Dsui_0542at 547.374 kb on - strand, within Dsui_0542at 547.424 kb on + strand, within Dsui_0542at 547.432 kb on - strand, within Dsui_0542at 547.622 kb on + strandat 547.918 kb on + strandat 547.918 kb on + strandat 547.924 kb on + strandat 547.925 kb on + strandat 547.926 kb on - strandat 548.015 kb on + strandat 548.071 kb on - strandat 548.092 kb on + strandat 548.098 kb on - strandat 548.100 kb on - strandat 548.100 kb on - strandat 548.172 kb on - strand, within Dsui_0543at 548.307 kb on + strand, within Dsui_0543at 548.482 kb on + strand, within Dsui_0543at 548.593 kb on + strand, within Dsui_0543at 548.613 kb on - strand, within Dsui_0543at 548.613 kb on - strandat 548.688 kb on - strand, within Dsui_0543

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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545,537 - Dsui_0541 0.43 -0.8
545,556 + Dsui_0541 0.45 +1.5
545,564 - Dsui_0541 0.45 -0.4
545,612 - Dsui_0541 0.50 +0.1
545,612 - Dsui_0541 0.50 +1.6
545,650 - Dsui_0541 0.54 -2.1
545,671 - Dsui_0541 0.56 -1.0
545,671 - Dsui_0541 0.56 +0.0
545,671 - Dsui_0541 0.56 -0.7
545,682 - Dsui_0541 0.58 +0.8
545,682 - Dsui_0541 0.58 +1.2
545,697 - Dsui_0541 0.59 +0.0
545,733 + +0.0
545,738 + Dsui_0541 0.63 -1.0
545,799 - Dsui_0541 0.70 +0.5
545,861 + +0.0
545,886 - Dsui_0541 0.78 +0.5
545,922 - Dsui_0541 0.82 -0.4
546,037 - +1.0
546,076 + +0.8
546,079 - +0.5
546,084 - -0.5
546,084 - +0.6
546,175 + -1.6
546,225 + -0.6
546,225 + -0.5
546,233 + -0.3
546,233 + -2.6
546,238 + +0.4
546,241 - -0.4
546,241 - +0.0
546,241 - +0.0
546,241 - -1.0
546,241 - +0.0
546,385 + +0.0
546,393 - Dsui_0542 0.12 +1.0
546,747 + Dsui_0542 0.36 +0.6
546,755 - Dsui_0542 0.36 -0.2
546,757 + Dsui_0542 0.36 +0.0
546,783 + Dsui_0542 0.38 -0.4
546,846 + Dsui_0542 0.42 +0.4
546,900 + Dsui_0542 0.46 +0.0
546,900 + Dsui_0542 0.46 +0.7
546,950 + Dsui_0542 0.49 +0.9
546,970 + Dsui_0542 0.51 +0.0
547,002 + -2.8
547,049 + Dsui_0542 0.56 -1.3
547,131 - Dsui_0542 0.62 +0.4
547,262 + Dsui_0542 0.70 -0.3
547,374 - Dsui_0542 0.78 -1.2
547,424 + Dsui_0542 0.81 +0.2
547,432 - Dsui_0542 0.82 -0.0
547,622 + -1.0
547,918 + -1.6
547,918 + -1.6
547,924 + +2.0
547,925 + +0.0
547,926 - +0.0
548,015 + -0.4
548,071 - +0.0
548,092 + -2.6
548,098 - -1.0
548,100 - +0.0
548,100 - -2.0
548,172 - Dsui_0543 0.10 +1.0
548,307 + Dsui_0543 0.16 -1.6
548,482 + Dsui_0543 0.24 -2.6
548,593 + Dsui_0543 0.29 +0.0
548,613 - Dsui_0543 0.30 -0.6
548,613 - +0.0
548,688 - Dsui_0543 0.33 -1.0

Or see this region's nucleotide sequence