Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0450 and Dsui_0451 are separated by 15 nucleotides Dsui_0451 and Dsui_0452 are separated by 8 nucleotides Dsui_0452 and Dsui_0453 are separated by 7 nucleotides Dsui_0453 and Dsui_0454 overlap by 17 nucleotides Dsui_0454 and Dsui_0455 are separated by 3 nucleotides
Dsui_0450: Dsui_0450 - MAF protein, at 457,030 to 457,650
_0450
Dsui_0451: Dsui_0451 - hypothetical protein, at 457,666 to 458,148
_0451
Dsui_0452: Dsui_0452 - iojap-like ribosome-associated protein, at 458,157 to 458,528
_0452
Dsui_0453: Dsui_0453 - nicotinate/nicotinamide nucleotide adenylyltransferase, at 458,536 to 459,210
_0453
Dsui_0454: Dsui_0454 - hypothetical protein, at 459,194 to 460,024
_0454
Dsui_0455: Dsui_0455 - putative integral membrane protein, at 460,028 to 460,786
_0455
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 457.559 kb on + strand, within Dsui_0450 at 457.645 kb on + strand at 457.712 kb on + strand at 457.720 kb on - strand, within Dsui_0451 at 457.720 kb on - strand, within Dsui_0451 at 457.739 kb on - strand, within Dsui_0451 at 457.739 kb on - strand, within Dsui_0451 at 457.758 kb on + strand at 457.758 kb on + strand, within Dsui_0451 at 457.766 kb on - strand, within Dsui_0451 at 457.766 kb on - strand, within Dsui_0451 at 457.917 kb on - strand, within Dsui_0451 at 457.933 kb on - strand, within Dsui_0451 at 457.965 kb on - strand, within Dsui_0451 at 458.033 kb on - strand, within Dsui_0451 at 458.035 kb on + strand at 458.080 kb on - strand, within Dsui_0451 at 458.082 kb on + strand, within Dsui_0451 at 458.092 kb on + strand, within Dsui_0451 at 458.100 kb on - strand at 458.379 kb on + strand at 458.441 kb on + strand, within Dsui_0452 at 458.442 kb on - strand, within Dsui_0452 at 458.449 kb on - strand, within Dsui_0452 at 458.473 kb on + strand, within Dsui_0452 at 458.483 kb on + strand, within Dsui_0452 at 458.483 kb on + strand at 458.483 kb on + strand, within Dsui_0452 at 458.483 kb on + strand, within Dsui_0452 at 458.491 kb on - strand at 459.200 kb on - strand at 459.200 kb on - strand at 459.231 kb on - strand at 459.431 kb on - strand, within Dsui_0454 at 459.543 kb on - strand, within Dsui_0454 at 459.942 kb on - strand at 459.973 kb on - strand at 460.021 kb on + strand at 460.059 kb on + strand at 460.067 kb on - strand at 460.067 kb on - strand at 460.140 kb on + strand at 460.148 kb on - strand, within Dsui_0455
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 457,559 + Dsui_0450 0.85 +0.5 457,645 + +0.2 457,712 + +0.7 457,720 - Dsui_0451 0.11 +0.8 457,720 - Dsui_0451 0.11 +0.3 457,739 - Dsui_0451 0.15 +0.7 457,739 - Dsui_0451 0.15 +0.8 457,758 + +1.0 457,758 + Dsui_0451 0.19 +1.1 457,766 - Dsui_0451 0.21 +1.3 457,766 - Dsui_0451 0.21 +0.8 457,917 - Dsui_0451 0.52 +0.2 457,933 - Dsui_0451 0.55 +0.6 457,965 - Dsui_0451 0.62 +1.2 458,033 - Dsui_0451 0.76 +0.8 458,035 + -1.0 458,080 - Dsui_0451 0.86 +0.3 458,082 + Dsui_0451 0.86 +0.7 458,092 + Dsui_0451 0.88 +0.3 458,100 - +0.1 458,379 + +0.0 458,441 + Dsui_0452 0.76 -0.6 458,442 - Dsui_0452 0.77 +0.1 458,449 - Dsui_0452 0.78 +0.3 458,473 + Dsui_0452 0.85 +1.2 458,483 + Dsui_0452 0.88 +0.1 458,483 + +0.7 458,483 + Dsui_0452 0.88 -0.3 458,483 + Dsui_0452 0.88 -0.4 458,491 - +0.2 459,200 - -1.6 459,200 - +0.0 459,231 - -2.0 459,431 - Dsui_0454 0.29 -2.2 459,543 - Dsui_0454 0.42 +0.0 459,942 - -0.4 459,973 - -1.0 460,021 + -0.6 460,059 + -1.0 460,067 - +0.0 460,067 - +0.0 460,140 + +0.0 460,148 - Dsui_0455 0.16 -0.9
Or see this region's nucleotide sequence