Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0270 and Dsui_0271 are separated by 77 nucleotides Dsui_0271 and Dsui_0272 overlap by 4 nucleotides Dsui_0272 and Dsui_0273 are separated by 9 nucleotides Dsui_0273 and Dsui_0274 are separated by 10 nucleotides Dsui_0274 and Dsui_0275 are separated by 216 nucleotides
Dsui_0270: Dsui_0270 - transcriptional regulator, at 271,668 to 272,336
_0270
Dsui_0271: Dsui_0271 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 272,414 to 273,121
_0271
Dsui_0272: Dsui_0272 - osmosensitive K+ channel histidine kinase, at 273,118 to 275,814
_0272
Dsui_0273: Dsui_0273 - hypothetical protein, at 275,824 to 276,000
_0273
Dsui_0274: Dsui_0274 - hypothetical protein, at 276,011 to 276,313
_0274
Dsui_0275: Dsui_0275 - conserved hypothetical protein, proteobacterial, at 276,530 to 277,366
_0275
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 272.167 kb on + strand, within Dsui_0270 at 272.226 kb on + strand, within Dsui_0270 at 272.478 kb on + strand at 272.502 kb on + strand at 272.751 kb on + strand at 272.830 kb on + strand, within Dsui_0271 at 272.988 kb on - strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.020 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.402 kb on + strand, within Dsui_0272 at 273.420 kb on - strand, within Dsui_0272 at 273.459 kb on - strand, within Dsui_0272 at 273.532 kb on + strand at 273.540 kb on - strand at 273.585 kb on - strand, within Dsui_0272 at 273.607 kb on + strand at 273.615 kb on - strand, within Dsui_0272 at 273.729 kb on + strand at 273.799 kb on - strand, within Dsui_0272 at 273.842 kb on + strand, within Dsui_0272 at 273.999 kb on - strand, within Dsui_0272 at 274.014 kb on - strand, within Dsui_0272 at 274.220 kb on - strand at 274.257 kb on - strand at 274.259 kb on - strand, within Dsui_0272 at 274.272 kb on + strand at 274.280 kb on - strand at 274.368 kb on - strand, within Dsui_0272 at 274.484 kb on + strand at 274.535 kb on - strand at 274.536 kb on - strand, within Dsui_0272 at 274.540 kb on + strand at 274.548 kb on - strand, within Dsui_0272 at 274.775 kb on - strand at 274.947 kb on + strand at 275.131 kb on + strand, within Dsui_0272 at 275.134 kb on - strand, within Dsui_0272 at 275.149 kb on - strand, within Dsui_0272 at 275.307 kb on - strand, within Dsui_0272 at 275.317 kb on - strand at 275.381 kb on + strand, within Dsui_0272 at 275.474 kb on - strand at 275.548 kb on + strand at 275.582 kb on + strand at 275.589 kb on - strand at 275.600 kb on - strand at 275.637 kb on - strand at 275.697 kb on - strand at 275.743 kb on + strand at 275.855 kb on - strand, within Dsui_0273 at 275.855 kb on - strand, within Dsui_0273 at 276.002 kb on + strand at 276.030 kb on - strand at 276.095 kb on - strand, within Dsui_0274 at 276.374 kb on + strand at 276.464 kb on + strand at 276.464 kb on + strand at 276.485 kb on + strand at 276.582 kb on - strand at 276.811 kb on + strand, within Dsui_0275
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 272,167 + Dsui_0270 0.75 -0.0 272,226 + Dsui_0270 0.83 -2.0 272,478 + +0.8 272,502 + -0.5 272,751 + -0.0 272,830 + Dsui_0271 0.59 +1.4 272,988 - Dsui_0271 0.81 +0.4 273,012 + Dsui_0271 0.84 -2.0 273,012 + Dsui_0271 0.84 +1.4 273,020 - Dsui_0271 0.86 +0.6 273,034 - Dsui_0271 0.88 -0.0 273,034 - Dsui_0271 0.88 +0.2 273,402 + Dsui_0272 0.11 +0.2 273,420 - Dsui_0272 0.11 +0.6 273,459 - Dsui_0272 0.13 -2.5 273,532 + -0.0 273,540 - -1.0 273,585 - Dsui_0272 0.17 -3.4 273,607 + -1.0 273,615 - Dsui_0272 0.18 -0.0 273,729 + -0.0 273,799 - Dsui_0272 0.25 -1.8 273,842 + Dsui_0272 0.27 -1.3 273,999 - Dsui_0272 0.33 -1.4 274,014 - Dsui_0272 0.33 -2.2 274,220 - -0.0 274,257 - -0.0 274,259 - Dsui_0272 0.42 -3.9 274,272 + -1.6 274,280 - -2.4 274,368 - Dsui_0272 0.46 -2.8 274,484 + -0.0 274,535 - -0.0 274,536 - Dsui_0272 0.53 -2.0 274,540 + -0.0 274,548 - Dsui_0272 0.53 -2.8 274,775 - -2.8 274,947 + -2.4 275,131 + Dsui_0272 0.75 -0.6 275,134 - Dsui_0272 0.75 +0.6 275,149 - Dsui_0272 0.75 -0.2 275,307 - Dsui_0272 0.81 -2.0 275,317 - -0.0 275,381 + Dsui_0272 0.84 -3.0 275,474 - -2.4 275,548 + -0.0 275,582 + -2.6 275,589 - -3.8 275,600 - -3.0 275,637 - -2.4 275,697 - -2.8 275,743 + +0.4 275,855 - Dsui_0273 0.18 +0.7 275,855 - Dsui_0273 0.18 +0.2 276,002 + -0.2 276,030 - -0.3 276,095 - Dsui_0274 0.28 -0.9 276,374 + +0.6 276,464 + +1.0 276,464 + +1.3 276,485 + +1.0 276,582 - -1.0 276,811 + Dsui_0275 0.34 +0.8
Or see this region's nucleotide sequence