Strain Fitness in Dechlorosoma suillum PS around Dsui_0169

Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0168 and Dsui_0169 overlap by 4 nucleotidesDsui_0169 and Dsui_0170 overlap by 4 nucleotides Dsui_0168: Dsui_0168 - Indole-3-glycerol phosphate synthase, at 171,905 to 172,708 _0168 Dsui_0169: Dsui_0169 - anthranilate phosphoribosyltransferase, at 172,705 to 173,727 _0169 Dsui_0170: Dsui_0170 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 173,724 to 174,296 _0170 Position (kb) 172 173 174Strain fitness (log2 ratio) -1 0 1 2at 173.733 kb on - strandat 173.733 kb on - strandat 174.500 kb on + strandat 174.530 kb on + strandat 174.536 kb on + strandat 174.536 kb on + strandat 174.544 kb on - strandat 174.544 kb on - strandat 174.544 kb on - strandat 174.544 kb on - strandat 174.544 kb on - strandat 174.566 kb on + strandat 174.595 kb on + strandat 174.663 kb on + strandat 174.666 kb on - strandat 174.671 kb on - strandat 174.676 kb on - strandat 174.676 kb on - strandat 174.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
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173,733 - -1.0
173,733 - +0.5
174,500 + +0.4
174,530 + -1.6
174,536 + +1.0
174,536 + +1.0
174,544 - +0.6
174,544 - -0.6
174,544 - +2.0
174,544 - +1.6
174,544 - -0.7
174,566 + +1.8
174,595 + -1.6
174,663 + +0.0
174,666 - +2.3
174,671 - -1.0
174,676 - -1.6
174,676 - +0.4
174,697 + +0.0

Or see this region's nucleotide sequence