Experiment: anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0052 and Dsui_0053 are separated by 91 nucleotides Dsui_0053 and Dsui_0054 are separated by 11 nucleotides Dsui_0054 and Dsui_0055 overlap by 4 nucleotides
Dsui_0052: Dsui_0052 - pyruvate kinase, at 49,388 to 50,833
_0052
Dsui_0053: Dsui_0053 - hypothetical protein, at 50,925 to 51,629
_0053
Dsui_0054: Dsui_0054 - glycosyl transferase possibly involved in lipopolysaccharide synthesis, at 51,641 to 52,201
_0054
Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385
_0055
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-1
0
1
2 at 49.931 kb on - strand, within Dsui_0052 at 49.964 kb on - strand, within Dsui_0052 at 50.000 kb on + strand, within Dsui_0052 at 50.027 kb on + strand, within Dsui_0052 at 50.089 kb on + strand, within Dsui_0052 at 50.101 kb on + strand, within Dsui_0052 at 50.269 kb on - strand, within Dsui_0052 at 50.293 kb on - strand, within Dsui_0052 at 50.293 kb on - strand, within Dsui_0052 at 50.383 kb on + strand, within Dsui_0052 at 50.508 kb on - strand, within Dsui_0052 at 50.534 kb on + strand, within Dsui_0052 at 50.542 kb on - strand, within Dsui_0052 at 50.685 kb on + strand at 50.685 kb on + strand, within Dsui_0052 at 50.685 kb on + strand at 50.685 kb on + strand, within Dsui_0052 at 50.685 kb on + strand, within Dsui_0052 at 50.685 kb on + strand at 50.693 kb on - strand at 50.787 kb on + strand at 50.991 kb on - strand at 51.071 kb on + strand at 51.135 kb on + strand at 51.159 kb on + strand, within Dsui_0053 at 51.495 kb on + strand, within Dsui_0053 at 51.541 kb on - strand, within Dsui_0053 at 51.580 kb on - strand at 51.580 kb on - strand at 51.583 kb on + strand at 51.591 kb on - strand at 52.211 kb on + strand at 52.399 kb on - strand, within Dsui_0055 at 52.578 kb on - strand, within Dsui_0055 at 52.583 kb on - strand, within Dsui_0055 at 52.607 kb on + strand, within Dsui_0055
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate remove 49,931 - Dsui_0052 0.38 -0.1 49,964 - Dsui_0052 0.40 +1.1 50,000 + Dsui_0052 0.42 -0.3 50,027 + Dsui_0052 0.44 +1.0 50,089 + Dsui_0052 0.48 -0.6 50,101 + Dsui_0052 0.49 +0.0 50,269 - Dsui_0052 0.61 +0.3 50,293 - Dsui_0052 0.63 +0.5 50,293 - Dsui_0052 0.63 +0.3 50,383 + Dsui_0052 0.69 +0.3 50,508 - Dsui_0052 0.77 +0.3 50,534 + Dsui_0052 0.79 -0.1 50,542 - Dsui_0052 0.80 -1.6 50,685 + +0.0 50,685 + Dsui_0052 0.90 +0.0 50,685 + -0.4 50,685 + Dsui_0052 0.90 +0.0 50,685 + Dsui_0052 0.90 +0.6 50,685 + +0.8 50,693 - +0.7 50,787 + +0.0 50,991 - -0.7 51,071 + +0.0 51,135 + -1.0 51,159 + Dsui_0053 0.33 -1.6 51,495 + Dsui_0053 0.81 +2.2 51,541 - Dsui_0053 0.87 +0.6 51,580 - +1.1 51,580 - +0.5 51,583 + +1.0 51,591 - +0.3 52,211 + -0.6 52,399 - Dsui_0055 0.17 -0.4 52,578 - Dsui_0055 0.32 -0.3 52,583 - Dsui_0055 0.32 -0.3 52,607 + Dsui_0055 0.34 +0.8
Or see this region's nucleotide sequence