Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03747

Experiment: PYE 4C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C
3,916,157	-		CCNA_03746	0.32	-1.2
3,916,159	+		CCNA_03746	0.32	-1.3
3,916,159	+		CCNA_03746	0.32	+0.1
3,916,160	+		CCNA_03746	0.32	-1.7
3,916,184	-		CCNA_03746	0.34	-1.8
3,916,208	+		CCNA_03746	0.36	+1.2
3,916,265	-		CCNA_03746	0.41	-0.6
3,916,274	+		CCNA_03746	0.42	+0.5
3,916,334	+		CCNA_03746	0.47	+0.1
3,916,341	-		CCNA_03746	0.48	-1.1
3,916,362	+		CCNA_03746	0.49	+0.7
3,916,366	+		CCNA_03746	0.50	-0.6
3,916,366	+		CCNA_03746	0.50	-0.5
3,916,374	-		CCNA_03746	0.51	-0.8
3,916,514	+		CCNA_03746	0.62	+0.5
3,916,522	-				+3.7
3,916,522	-		CCNA_03746	0.63	-1.6
3,916,522	-		CCNA_03746	0.63	-2.0
3,916,592	+		CCNA_03746	0.69	+0.2
3,916,596	-		CCNA_03746	0.69	-2.3
3,916,649	+		CCNA_03746	0.74	+0.6
3,916,649	+		CCNA_03746	0.74	+0.3
3,916,649	+		CCNA_03746	0.74	-0.2
3,916,649	+		CCNA_03746	0.74	+1.3
3,916,649	+		CCNA_03746	0.74	+1.0
3,916,649	+		CCNA_03746	0.74	+1.2
3,916,649	+		CCNA_03746	0.74	+0.2
3,916,649	+		CCNA_03746	0.74	-1.4
3,916,649	+		CCNA_03746	0.74	+1.8
3,916,649	+		CCNA_03746	0.74	-0.1
3,916,649	+		CCNA_03746	0.74	+0.5
3,916,649	+		CCNA_03746	0.74	+1.1
3,916,655	+		CCNA_03746	0.74	+0.5
3,916,657	-		CCNA_03746	0.75	-2.9
3,916,657	-		CCNA_03746	0.75	-1.0
3,916,657	-		CCNA_03746	0.75	-0.7
3,916,657	-		CCNA_03746	0.75	+1.9
3,916,657	-		CCNA_03746	0.75	-2.9
3,916,657	-		CCNA_03746	0.75	-2.4
3,916,657	-		CCNA_03746	0.75	+0.6
3,916,657	-		CCNA_03746	0.75	-0.6
3,916,657	-		CCNA_03746	0.75	-0.7
3,916,657	-		CCNA_03746	0.75	+0.2
3,916,709	-		CCNA_03746	0.79	-0.6
3,916,709	-		CCNA_03746	0.79	+1.3
3,916,737	-		CCNA_03746	0.81	-1.1
3,916,742	-		CCNA_03746	0.82	+0.4
3,916,755	-		CCNA_03746	0.83	-0.8
3,916,797	+		CCNA_03746	0.86	-1.3
3,916,809	+		CCNA_03746	0.88	-2.0
3,916,811	+		CCNA_03746	0.88	-0.1
3,916,811	+		CCNA_03746	0.88	+0.1
3,916,811	+		CCNA_03746	0.88	+0.0
3,916,811	+		CCNA_03746	0.88	+1.1
3,916,811	+		CCNA_03746	0.88	+0.3
3,916,811	+		CCNA_03746	0.88	+0.4
3,916,811	+		CCNA_03746	0.88	-0.3
3,916,811	+		CCNA_03746	0.88	-0.7
3,916,819	-		CCNA_03746	0.88	-0.7
3,916,819	-		CCNA_03746	0.88	-0.9
3,916,819	-		CCNA_03746	0.88	-0.9
3,916,819	-		CCNA_03746	0.88	-0.6
3,916,826	+		CCNA_03746	0.89	+0.0
3,916,850	+				+1.3
3,916,855	+				+0.7
3,916,869	+				+0.4
3,916,895	-				-0.9
3,916,897	+				-0.6
3,916,905	-				+0.1
3,916,917	+				-0.4
3,916,935	+				-0.4
3,916,982	-				-0.7
3,916,995	+				-1.3
3,917,003	-				+0.4
3,917,011	+				+0.2
3,917,017	-				-1.1
3,917,017	-				-1.6
3,917,029	-				-1.7
3,917,044	-				-0.9
3,917,089	+				-0.8
3,917,097	-				-1.0
3,917,183	+				+1.9
3,917,194	+				-0.9
3,917,194	+				-2.9
3,917,195	+		CCNA_03747	0.10	-1.6
3,917,216	+		CCNA_03747	0.12	-0.3
3,917,227	+		CCNA_03747	0.13	-2.9
3,917,235	-		CCNA_03747	0.14	-1.8
3,917,235	-		CCNA_03747	0.14	-2.9
3,917,242	+		CCNA_03747	0.15	-2.4
3,917,250	-		CCNA_03747	0.15	-3.9
3,917,250	-		CCNA_03747	0.15	-5.4
3,917,291	+		CCNA_03747	0.19	+1.9
3,917,310	+		CCNA_03747	0.21	-2.4
3,917,337	-		CCNA_03747	0.24	-3.2
3,917,381	+		CCNA_03747	0.28	-1.6
3,917,381	+		CCNA_03747	0.28	+1.9
3,917,404	+		CCNA_03747	0.30	-2.4
3,917,440	+		CCNA_03747	0.34	-2.7
3,917,443	-		CCNA_03747	0.34	-2.4
3,917,459	+		CCNA_03747	0.36	-0.1
3,917,459	+		CCNA_03747	0.36	-2.4
3,917,459	+		CCNA_03747	0.36	-3.0
3,917,467	-		CCNA_03747	0.37	-1.3
3,917,467	-		CCNA_03747	0.37	-4.1
3,917,467	-		CCNA_03747	0.37	-2.5
3,917,467	-		CCNA_03747	0.37	-4.4
3,917,467	-		CCNA_03747	0.37	-3.2
3,917,471	+		CCNA_03747	0.37	-1.3
3,917,473	-		CCNA_03747	0.37	-2.4
3,917,479	-		CCNA_03747	0.38	-1.1
3,917,492	+		CCNA_03747	0.39	-1.1
3,917,515	-		CCNA_03747	0.41	-1.7
3,917,520	-		CCNA_03747	0.42	-2.8
3,917,550	+		CCNA_03747	0.45	-0.4
3,917,573	+		CCNA_03747	0.47	-3.7
3,917,585	-		CCNA_03747	0.48	-4.0
3,917,653	+		CCNA_03747	0.55	-4.5
3,917,661	-		CCNA_03747	0.55	-4.6
3,917,679	-		CCNA_03747	0.57	-1.7
3,917,686	+				+1.5
3,917,734	+		CCNA_03747	0.63	-0.7
3,917,745	+		CCNA_03747	0.64	-1.1
3,917,825	+		CCNA_03747	0.71	-2.6
3,917,830	+		CCNA_03747	0.72	-1.8
3,917,830	+		CCNA_03747	0.72	-1.9
3,917,835	+		CCNA_03747	0.72	-1.3
3,917,849	+		CCNA_03747	0.74	-3.6
3,917,890	+		CCNA_03747	0.78	-2.1
3,917,898	-		CCNA_03747	0.79	-2.9
3,917,898	-		CCNA_03747	0.79	-2.2
3,917,898	-		CCNA_03747	0.79	-1.4
3,917,898	-		CCNA_03747	0.79	-4.0
3,917,898	-		CCNA_03747	0.79	-2.0
3,917,963	+		CCNA_03747	0.85	-0.4
3,918,012	-		CCNA_03747	0.90	-3.0
3,918,025	-				-2.7
3,918,030	-				-3.6
3,918,033	+				-2.1
3,918,033	+				-4.0
3,918,033	+				-3.5
3,918,039	+				-5.1
3,918,059	-				-4.1
3,918,062	-				-2.6
3,918,063	-				-0.1
3,918,072	+				-2.9
3,918,080	-				-1.3
3,918,097	-				-2.3
3,918,137	+				+0.8
3,918,152	-				+2.2
3,918,184	-				-3.3
3,918,185	-				-4.0
3,918,215	-		CCNA_03748	0.11	-2.1
3,918,289	-		CCNA_03748	0.24	-2.3
3,918,291	+		CCNA_03748	0.25	-3.3
3,918,349	-		CCNA_03748	0.35	-2.4
3,918,363	+		CCNA_03748	0.37	-4.0
3,918,363	+		CCNA_03748	0.37	-4.1
3,918,363	+		CCNA_03748	0.37	-2.1
3,918,370	+		CCNA_03748	0.39	-2.7
3,918,371	-		CCNA_03748	0.39	-1.4
3,918,378	-		CCNA_03748	0.40	-4.6
3,918,383	-		CCNA_03748	0.41	-3.5
3,918,424	+		CCNA_03748	0.48	-2.7
3,918,452	+		CCNA_03748	0.53	-3.3
3,918,459	+		CCNA_03748	0.55	-3.3
3,918,493	+		CCNA_03748	0.61	-3.1
3,918,510	+		CCNA_03748	0.64	-3.2
3,918,546	+		CCNA_03748	0.70	-2.4
3,918,549	-		CCNA_03748	0.71	-3.6
3,918,561	+		CCNA_03748	0.73	-2.8
3,918,578	-		CCNA_03748	0.76	-1.6
3,918,579	-		CCNA_03748	0.76	-0.9
3,918,579	-		CCNA_03748	0.76	-2.3
3,918,585	-		CCNA_03748	0.77	-2.0
3,918,705	-				-2.3
3,918,726	-				-1.3
3,918,733	+				-0.6
3,918,733	+				-0.5
3,918,734	-				+0.1
3,918,741	-				+0.0
3,918,761	+				+0.5
3,918,779	-				-0.9
3,918,779	-				-0.3
3,918,812	+				+0.1
3,918,820	-				+0.1
3,918,825	+				+0.8
3,918,833	-				-0.9
3,918,853	+				+1.0
3,918,853	+				-1.1
3,918,861	-				+0.6
3,918,869	-				-0.5
3,918,873	+				-0.3
3,918,894	+				-0.0
3,918,894	+				+0.4
3,918,902	-				-1.3
3,918,902	-				+0.2
3,918,921	+				+1.1
3,918,929	-		CCNA_03749	0.11	-2.8
3,918,931	-		CCNA_03749	0.11	-0.3
3,918,947	-		CCNA_03749	0.13	+0.0
3,918,975	+		CCNA_03749	0.16	-0.2
3,919,038	+		CCNA_03749	0.23	+1.3