Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00230

Experiment: PYE 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00229 and CCNA_00230 are separated by 0 nucleotidesCCNA_00230 and CCNA_00231 are separated by 51 nucleotidesCCNA_00231 and CCNA_00232 overlap by 4 nucleotides CCNA_00229: CCNA_00229 - CAAX amino terminal protease family protein, at 244,790 to 245,764 _00229 CCNA_00230: CCNA_00230 - ribosomal large subunit pseudouridine synthase B, at 245,765 to 247,003 _00230 CCNA_00231: CCNA_00231 - tRNA-specific adenosine deaminase, at 247,055 to 247,540 _00231 CCNA_00232: CCNA_00232 - hypothetical protein, at 247,537 to 247,953 _00232 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 244.766 kb on - strandat 244.766 kb on - strandat 244.766 kb on - strandat 244.803 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.811 kb on - strandat 244.813 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.872 kb on + strandat 244.924 kb on + strand, within CCNA_00229at 244.927 kb on - strand, within CCNA_00229at 244.943 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.975 kb on + strand, within CCNA_00229at 245.002 kb on + strand, within CCNA_00229at 245.054 kb on + strand, within CCNA_00229at 245.056 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.079 kb on + strand, within CCNA_00229at 245.093 kb on - strand, within CCNA_00229at 245.096 kb on + strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.201 kb on + strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.206 kb on + strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.214 kb on - strand, within CCNA_00229at 245.215 kb on + strand, within CCNA_00229at 245.257 kb on - strand, within CCNA_00229at 245.270 kb on - strand, within CCNA_00229at 245.285 kb on + strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.307 kb on - strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.424 kb on + strand, within CCNA_00229at 245.441 kb on + strand, within CCNA_00229at 245.449 kb on - strand, within CCNA_00229at 245.476 kb on - strand, within CCNA_00229at 245.486 kb on + strand, within CCNA_00229at 245.494 kb on - strand, within CCNA_00229at 245.508 kb on + strandat 245.508 kb on + strand, within CCNA_00229at 245.513 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.519 kb on + strand, within CCNA_00229at 245.521 kb on - strand, within CCNA_00229at 245.526 kb on - strand, within CCNA_00229at 245.537 kb on - strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.620 kb on + strand, within CCNA_00229at 245.651 kb on - strand, within CCNA_00229at 245.656 kb on - strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.667 kb on + strandat 245.668 kb on + strandat 245.674 kb on - strandat 245.701 kb on + strandat 245.702 kb on - strandat 245.709 kb on - strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.728 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.738 kb on + strandat 245.741 kb on - strandat 245.741 kb on - strandat 245.761 kb on - strandat 245.776 kb on - strandat 245.780 kb on + strandat 245.836 kb on - strandat 245.926 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.977 kb on - strand, within CCNA_00230at 245.982 kb on + strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 246.001 kb on - strandat 246.013 kb on + strand, within CCNA_00230at 246.032 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.058 kb on + strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.074 kb on - strand, within CCNA_00230at 246.168 kb on + strand, within CCNA_00230at 246.176 kb on - strandat 246.176 kb on - strand, within CCNA_00230at 246.202 kb on - strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on - strand, within CCNA_00230at 246.257 kb on - strand, within CCNA_00230at 246.280 kb on + strand, within CCNA_00230at 246.309 kb on + strand, within CCNA_00230at 246.319 kb on + strand, within CCNA_00230at 246.327 kb on - strand, within CCNA_00230at 246.343 kb on - strand, within CCNA_00230at 246.359 kb on + strand, within CCNA_00230at 246.374 kb on - strand, within CCNA_00230at 246.376 kb on + strand, within CCNA_00230at 246.384 kb on - strand, within CCNA_00230at 246.427 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.500 kb on + strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.551 kb on - strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.601 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.617 kb on + strand, within CCNA_00230at 246.625 kb on - strand, within CCNA_00230at 246.657 kb on + strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.727 kb on + strand, within CCNA_00230at 246.735 kb on - strand, within CCNA_00230at 246.765 kb on + strand, within CCNA_00230at 246.786 kb on - strand, within CCNA_00230at 246.824 kb on + strand, within CCNA_00230at 246.832 kb on - strand, within CCNA_00230at 246.858 kb on + strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.884 kb on - strandat 246.905 kb on + strandat 246.913 kb on - strandat 246.936 kb on - strandat 246.960 kb on + strandat 246.977 kb on + strandat 246.980 kb on - strandat 247.018 kb on + strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.040 kb on + strandat 247.072 kb on - strandat 247.076 kb on + strandat 247.084 kb on - strandat 247.084 kb on - strandat 247.522 kb on + strandat 247.522 kb on + strandat 247.530 kb on - strandat 247.558 kb on + strandat 247.582 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.595 kb on - strand, within CCNA_00232at 247.609 kb on - strand, within CCNA_00232at 247.633 kb on + strand, within CCNA_00232at 247.654 kb on - strand, within CCNA_00232at 247.656 kb on + strand, within CCNA_00232at 247.659 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.672 kb on - strand, within CCNA_00232at 247.673 kb on + strand, within CCNA_00232at 247.686 kb on - strand, within CCNA_00232at 247.692 kb on - strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.715 kb on + strand, within CCNA_00232at 247.717 kb on - strand, within CCNA_00232at 247.722 kb on - strand, within CCNA_00232at 247.732 kb on - strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.759 kb on + strand, within CCNA_00232at 247.808 kb on + strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.824 kb on + strand, within CCNA_00232at 247.850 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.889 kb on - strand, within CCNA_00232at 247.975 kb on + strandat 247.994 kb on - strandat 247.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C
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244,766 - +1.0
244,766 - -0.0
244,766 - -2.0
244,803 + -0.7
244,807 + -1.0
244,807 + +0.4
244,807 + +0.9
244,807 + +1.0
244,807 + +1.8
244,807 + -0.7
244,811 - -0.0
244,813 - -2.0
244,815 - -0.3
244,815 - -1.2
244,815 - -0.2
244,815 - -0.8
244,872 + +2.1
244,924 + CCNA_00229 0.14 +0.3
244,927 - CCNA_00229 0.14 -0.4
244,943 + CCNA_00229 0.16 -0.9
244,950 + CCNA_00229 0.16 -0.0
244,950 + CCNA_00229 0.16 +0.2
244,951 - CCNA_00229 0.17 -0.4
244,951 - CCNA_00229 0.17 -0.7
244,951 - CCNA_00229 0.17 -1.6
244,951 - CCNA_00229 0.17 -0.8
244,951 - CCNA_00229 0.17 -1.2
244,951 - CCNA_00229 0.17 -1.5
244,975 + CCNA_00229 0.19 -0.4
245,002 + CCNA_00229 0.22 +0.1
245,054 + CCNA_00229 0.27 -2.9
245,056 + CCNA_00229 0.27 +0.5
245,060 + CCNA_00229 0.28 -1.7
245,060 + CCNA_00229 0.28 -0.2
245,060 + CCNA_00229 0.28 -0.9
245,079 + CCNA_00229 0.30 -1.1
245,093 - CCNA_00229 0.31 -0.7
245,096 + CCNA_00229 0.31 +0.3
245,194 - CCNA_00229 0.41 -2.9
245,194 - CCNA_00229 0.41 +1.0
245,194 - CCNA_00229 0.41 +1.8
245,194 - CCNA_00229 0.41 +0.9
245,196 + CCNA_00229 0.42 -0.6
245,196 + CCNA_00229 0.42 +0.2
245,201 + CCNA_00229 0.42 -1.2
245,204 - CCNA_00229 0.42 +0.9
245,204 - CCNA_00229 0.42 -2.1
245,204 - CCNA_00229 0.42 -0.6
245,206 + CCNA_00229 0.43 +0.2
245,209 - CCNA_00229 0.43 +0.2
245,209 - CCNA_00229 0.43 -0.6
245,214 - CCNA_00229 0.43 +0.8
245,215 + CCNA_00229 0.44 +0.2
245,257 - CCNA_00229 0.48 +0.4
245,270 - CCNA_00229 0.49 +1.2
245,285 + CCNA_00229 0.51 -1.6
245,297 - CCNA_00229 0.52 -0.8
245,297 - CCNA_00229 0.52 +0.4
245,307 - CCNA_00229 0.53 -1.1
245,402 + CCNA_00229 0.63 -0.8
245,402 + CCNA_00229 0.63 +1.8
245,424 + CCNA_00229 0.65 -1.4
245,441 + CCNA_00229 0.67 +1.8
245,449 - CCNA_00229 0.68 -1.0
245,476 - CCNA_00229 0.70 -0.3
245,486 + CCNA_00229 0.71 +0.8
245,494 - CCNA_00229 0.72 -1.3
245,508 + +0.8
245,508 + CCNA_00229 0.74 +0.2
245,513 + CCNA_00229 0.74 -2.4
245,518 + CCNA_00229 0.75 +0.2
245,518 + CCNA_00229 0.75 -1.5
245,519 + CCNA_00229 0.75 -0.2
245,521 - CCNA_00229 0.75 -1.7
245,526 - CCNA_00229 0.75 -1.0
245,537 - CCNA_00229 0.77 -0.6
245,573 + CCNA_00229 0.80 -0.2
245,573 + CCNA_00229 0.80 -0.9
245,573 + CCNA_00229 0.80 -0.3
245,620 + CCNA_00229 0.85 -1.2
245,651 - CCNA_00229 0.88 -0.6
245,656 - CCNA_00229 0.89 +1.8
245,666 + CCNA_00229 0.90 -1.1
245,666 + CCNA_00229 0.90 -0.4
245,667 + -0.7
245,668 + -1.0
245,674 - +0.0
245,701 + -0.5
245,702 - -0.1
245,709 - +0.1
245,720 + +1.7
245,720 + +0.1
245,723 - +0.2
245,723 - +0.0
245,723 - -0.6
245,728 + -1.6
245,733 + +0.4
245,733 + +1.1
245,733 + -0.1
245,738 + +0.1
245,741 - +1.5
245,741 - -0.2
245,761 - -0.6
245,776 - -0.1
245,780 + -1.4
245,836 - -0.5
245,926 - CCNA_00230 0.13 +3.0
245,948 - CCNA_00230 0.15 -0.6
245,948 - CCNA_00230 0.15 -0.5
245,977 - CCNA_00230 0.17 -0.6
245,982 + CCNA_00230 0.18 -1.6
245,990 - CCNA_00230 0.18 -0.6
245,990 - CCNA_00230 0.18 -0.8
246,001 - -2.5
246,013 + CCNA_00230 0.20 -1.7
246,032 - CCNA_00230 0.22 -2.4
246,043 - CCNA_00230 0.22 -2.2
246,043 - CCNA_00230 0.22 -1.4
246,058 + CCNA_00230 0.24 -0.6
246,066 - CCNA_00230 0.24 -0.6
246,066 - CCNA_00230 0.24 -1.6
246,074 - CCNA_00230 0.25 -2.9
246,168 + CCNA_00230 0.33 -1.4
246,176 - -0.8
246,176 - CCNA_00230 0.33 -0.9
246,202 - CCNA_00230 0.35 -0.6
246,213 + CCNA_00230 0.36 -0.8
246,213 + CCNA_00230 0.36 -0.6
246,213 + CCNA_00230 0.36 -1.6
246,213 - CCNA_00230 0.36 -1.5
246,257 - CCNA_00230 0.40 -4.1
246,280 + CCNA_00230 0.42 -2.4
246,309 + CCNA_00230 0.44 -2.3
246,319 + CCNA_00230 0.45 -0.4
246,327 - CCNA_00230 0.45 -0.6
246,343 - CCNA_00230 0.47 +0.2
246,359 + CCNA_00230 0.48 -2.1
246,374 - CCNA_00230 0.49 -1.0
246,376 + CCNA_00230 0.49 -1.1
246,384 - CCNA_00230 0.50 -0.6
246,427 + CCNA_00230 0.53 -0.8
246,448 + CCNA_00230 0.55 -1.4
246,448 + CCNA_00230 0.55 -1.2
246,495 + CCNA_00230 0.59 -3.5
246,495 + CCNA_00230 0.59 -1.1
246,500 + CCNA_00230 0.59 -0.6
246,503 - CCNA_00230 0.60 -1.6
246,503 - CCNA_00230 0.60 +0.4
246,508 - CCNA_00230 0.60 +0.3
246,508 - CCNA_00230 0.60 -1.1
246,508 - CCNA_00230 0.60 -3.5
246,551 - CCNA_00230 0.63 -2.2
246,562 + CCNA_00230 0.64 -0.8
246,562 + CCNA_00230 0.64 +1.8
246,570 - CCNA_00230 0.65 -3.2
246,570 - CCNA_00230 0.65 +0.9
246,601 + CCNA_00230 0.67 -0.2
246,609 + CCNA_00230 0.68 -3.7
246,609 + CCNA_00230 0.68 +0.2
246,617 + CCNA_00230 0.69 +1.5
246,625 - CCNA_00230 0.69 -1.5
246,657 + CCNA_00230 0.72 +0.8
246,665 - CCNA_00230 0.73 -1.8
246,665 - CCNA_00230 0.73 -3.1
246,665 - CCNA_00230 0.73 -1.8
246,665 - CCNA_00230 0.73 -1.9
246,665 - CCNA_00230 0.73 -0.8
246,665 - CCNA_00230 0.73 -2.1
246,727 + CCNA_00230 0.78 -2.6
246,735 - CCNA_00230 0.78 +0.3
246,765 + CCNA_00230 0.81 -1.8
246,786 - CCNA_00230 0.82 -1.4
246,824 + CCNA_00230 0.85 -0.8
246,832 - CCNA_00230 0.86 -2.2
246,858 + CCNA_00230 0.88 -0.4
246,866 - CCNA_00230 0.89 -0.2
246,866 - CCNA_00230 0.89 -1.2
246,884 - -1.5
246,905 + -2.9
246,913 - -3.9
246,936 - -0.9
246,960 + -1.1
246,977 + -1.8
246,980 - -0.2
247,018 + +0.0
247,021 - -1.3
247,021 - -0.4
247,021 - +0.1
247,040 + +0.2
247,072 - -0.5
247,076 + +2.2
247,084 - -0.4
247,084 - -0.4
247,522 + +0.3
247,522 + +0.5
247,530 - +0.0
247,558 + +3.0
247,582 + CCNA_00232 0.11 -0.7
247,587 + CCNA_00232 0.12 -1.5
247,587 + CCNA_00232 0.12 +0.8
247,595 - CCNA_00232 0.14 -0.4
247,609 - CCNA_00232 0.17 -0.6
247,633 + CCNA_00232 0.23 +1.4
247,654 - CCNA_00232 0.28 +0.4
247,656 + CCNA_00232 0.29 -0.2
247,659 - CCNA_00232 0.29 -0.7
247,664 - CCNA_00232 0.30 -0.6
247,664 - CCNA_00232 0.30 -1.9
247,664 - CCNA_00232 0.30 +0.8
247,672 - CCNA_00232 0.32 -0.1
247,673 + CCNA_00232 0.33 -1.6
247,686 - CCNA_00232 0.36 +0.5
247,692 - CCNA_00232 0.37 +0.9
247,709 + CCNA_00232 0.41 +1.8
247,709 + CCNA_00232 0.41 +0.2
247,715 + CCNA_00232 0.43 -2.3
247,717 - CCNA_00232 0.43 +0.7
247,722 - CCNA_00232 0.44 +2.6
247,732 - CCNA_00232 0.47 +0.4
247,750 + CCNA_00232 0.51 -0.3
247,750 + CCNA_00232 0.51 +0.5
247,758 - CCNA_00232 0.53 -0.1
247,758 - CCNA_00232 0.53 -1.6
247,759 + CCNA_00232 0.53 -0.5
247,808 + CCNA_00232 0.65 -2.2
247,816 - CCNA_00232 0.67 +1.0
247,816 - CCNA_00232 0.67 -0.7
247,824 + CCNA_00232 0.69 -0.2
247,850 - CCNA_00232 0.75 +0.4
247,864 - CCNA_00232 0.78 +0.1
247,864 - CCNA_00232 0.78 +0.0
247,864 - CCNA_00232 0.78 +0.8
247,889 - CCNA_00232 0.84 -1.0
247,975 + -0.9
247,994 - -1.4
247,994 - -3.4

Or see this region's nucleotide sequence