Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00063

Experiment: PYE 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00062 and CCNA_03913 are separated by 78 nucleotidesCCNA_03913 and CCNA_00063 are separated by 41 nucleotidesCCNA_00063 and CCNA_00064 are separated by 239 nucleotides CCNA_00062: CCNA_00062 - tryptophanyl-tRNA synthetase, at 63,327 to 64,361 _00062 CCNA_03913: CCNA_03913 - hypothetical protein, at 64,440 to 64,487 _03913 CCNA_00063: CCNA_00063 - MviN-family integral membrane protein, at 64,529 to 66,091 _00063 CCNA_00064: CCNA_00064 - methyl-accepting chemotaxis protein, at 66,331 to 68,127 _00064 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.363 kb on + strandat 64.384 kb on + strandat 64.450 kb on - strand, within CCNA_03913at 64.500 kb on + strandat 64.502 kb on + strandat 64.502 kb on + strandat 64.502 kb on + strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.510 kb on - strandat 64.512 kb on + strandat 64.520 kb on - strandat 64.520 kb on - strandat 64.520 kb on - strandat 64.525 kb on - strandat 64.525 kb on - strandat 64.530 kb on - strandat 64.557 kb on + strandat 64.560 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.565 kb on - strandat 64.581 kb on - strandat 64.581 kb on - strandat 64.581 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.613 kb on - strandat 64.649 kb on + strandat 64.649 kb on + strandat 64.657 kb on - strandat 64.670 kb on - strandat 66.145 kb on + strandat 66.153 kb on - strandat 66.154 kb on + strandat 66.180 kb on + strandat 66.180 kb on + strandat 66.181 kb on + strandat 66.188 kb on - strandat 66.188 kb on - strandat 66.188 kb on - strandat 66.223 kb on + strandat 66.289 kb on + strandat 66.297 kb on + strandat 66.374 kb on + strandat 66.379 kb on + strandat 66.382 kb on - strandat 66.387 kb on - strandat 66.411 kb on + strandat 66.411 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on + strandat 66.459 kb on - strandat 66.462 kb on - strandat 66.495 kb on + strandat 66.496 kb on - strandat 66.506 kb on - strandat 66.599 kb on + strandat 66.612 kb on + strand, within CCNA_00064at 66.621 kb on - strand, within CCNA_00064at 66.624 kb on + strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.657 kb on - strand, within CCNA_00064at 66.666 kb on + strand, within CCNA_00064at 66.674 kb on - strand, within CCNA_00064at 66.690 kb on + strand, within CCNA_00064at 66.697 kb on + strand, within CCNA_00064at 66.698 kb on - strand, within CCNA_00064at 66.713 kb on - strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.720 kb on + strand, within CCNA_00064at 66.728 kb on - strand, within CCNA_00064at 66.774 kb on + strand, within CCNA_00064at 66.782 kb on - strand, within CCNA_00064at 66.783 kb on + strand, within CCNA_00064at 66.802 kb on + strand, within CCNA_00064at 66.820 kb on + strand, within CCNA_00064at 66.852 kb on - strand, within CCNA_00064at 66.881 kb on - strand, within CCNA_00064at 66.916 kb on - strand, within CCNA_00064at 66.917 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.919 kb on + strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.927 kb on - strand, within CCNA_00064at 66.929 kb on - strand, within CCNA_00064at 66.998 kb on + strand, within CCNA_00064at 67.002 kb on + strand, within CCNA_00064at 67.009 kb on - strand, within CCNA_00064

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C
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64,363 + -0.5
64,384 + +0.0
64,450 - CCNA_03913 0.21 -1.6
64,500 + -0.2
64,502 + +0.8
64,502 + -0.9
64,502 + +0.1
64,510 - -0.9
64,510 - -0.7
64,510 - -0.2
64,510 - +0.4
64,512 + -1.9
64,520 - -0.3
64,520 - +0.0
64,520 - -0.4
64,525 - -0.4
64,525 - -0.8
64,530 - -0.5
64,557 + -0.3
64,560 - -1.3
64,565 - -0.5
64,565 - +0.5
64,565 - -0.8
64,565 - +0.1
64,565 - -0.2
64,565 - -0.2
64,565 - -1.1
64,581 - +0.5
64,581 - -0.8
64,581 - -0.2
64,613 - -0.3
64,613 - -0.2
64,613 - +0.0
64,613 - -0.7
64,613 - +0.2
64,613 - +0.0
64,613 - -0.8
64,613 - +0.8
64,613 - -0.0
64,613 - +1.2
64,613 - -0.9
64,613 - -0.1
64,613 - +0.3
64,649 + -2.1
64,649 + -3.3
64,657 - +1.2
64,670 - -0.1
66,145 + -0.4
66,153 - +0.3
66,154 + +0.2
66,180 + -1.0
66,180 + -0.3
66,181 + -0.5
66,188 - -1.2
66,188 - -1.3
66,188 - +0.2
66,223 + +0.6
66,289 + +0.8
66,297 + -0.2
66,374 + -0.9
66,379 + -2.2
66,382 - -0.2
66,387 - -0.3
66,411 + +0.4
66,411 + -0.8
66,459 + -1.9
66,459 + -1.2
66,459 + -0.1
66,459 + +0.2
66,459 + -1.5
66,459 - +0.5
66,462 - -0.5
66,495 + -1.0
66,496 - -2.6
66,506 - +0.8
66,599 + +0.0
66,612 + CCNA_00064 0.16 +1.8
66,621 - CCNA_00064 0.16 -0.9
66,624 + CCNA_00064 0.16 +0.1
66,657 - CCNA_00064 0.18 -0.3
66,657 - CCNA_00064 0.18 +0.8
66,657 - CCNA_00064 0.18 -1.4
66,666 + CCNA_00064 0.19 +0.3
66,674 - CCNA_00064 0.19 +1.1
66,690 + CCNA_00064 0.20 +0.2
66,697 + CCNA_00064 0.20 -1.2
66,698 - CCNA_00064 0.20 -0.3
66,713 - CCNA_00064 0.21 -0.8
66,720 + CCNA_00064 0.22 +0.5
66,720 + CCNA_00064 0.22 -2.0
66,720 + CCNA_00064 0.22 -0.8
66,728 - CCNA_00064 0.22 +0.5
66,774 + CCNA_00064 0.25 +0.1
66,782 - CCNA_00064 0.25 -0.7
66,783 + CCNA_00064 0.25 +0.3
66,802 + CCNA_00064 0.26 -1.4
66,820 + CCNA_00064 0.27 -0.0
66,852 - CCNA_00064 0.29 -2.1
66,881 - CCNA_00064 0.31 +0.2
66,916 - CCNA_00064 0.33 -2.5
66,917 + CCNA_00064 0.33 -1.0
66,919 + CCNA_00064 0.33 -0.3
66,919 + CCNA_00064 0.33 -0.6
66,919 + CCNA_00064 0.33 -0.2
66,919 + CCNA_00064 0.33 -2.3
66,919 + CCNA_00064 0.33 -0.3
66,919 + CCNA_00064 0.33 -0.0
66,927 - CCNA_00064 0.33 +0.8
66,927 - CCNA_00064 0.33 +0.0
66,927 - CCNA_00064 0.33 -1.6
66,929 - CCNA_00064 0.33 -0.8
66,998 + CCNA_00064 0.37 +1.6
67,002 + CCNA_00064 0.37 -0.2
67,009 - CCNA_00064 0.38 +1.1

Or see this region's nucleotide sequence