Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00019

Experiment: PYE 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00018 and CCNA_00019 are separated by 30 nucleotidesCCNA_00019 and CCNA_00020 overlap by 4 nucleotidesCCNA_00020 and CCNA_03911 overlap by 4 nucleotidesCCNA_03911 and CCNA_00021 are separated by 61 nucleotides CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784 _00018 CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447 _00019 CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668 _00020 CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778 _03911 CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032 _00021 Position (kb) 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 18.910 kb on - strand, within CCNA_00018at 18.920 kb on - strand, within CCNA_00018at 18.920 kb on - strand, within CCNA_00018at 18.933 kb on + strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.989 kb on + strand, within CCNA_00018at 18.992 kb on - strand, within CCNA_00018at 18.995 kb on + strand, within CCNA_00018at 19.064 kb on + strand, within CCNA_00018at 19.105 kb on + strand, within CCNA_00018at 19.113 kb on - strand, within CCNA_00018at 19.113 kb on - strand, within CCNA_00018at 19.115 kb on + strand, within CCNA_00018at 19.115 kb on + strand, within CCNA_00018at 19.123 kb on - strand, within CCNA_00018at 19.123 kb on - strand, within CCNA_00018at 19.133 kb on - strand, within CCNA_00018at 19.133 kb on - strand, within CCNA_00018at 19.143 kb on - strand, within CCNA_00018at 19.143 kb on - strand, within CCNA_00018at 19.161 kb on - strand, within CCNA_00018at 19.161 kb on - strand, within CCNA_00018at 19.161 kb on - strand, within CCNA_00018at 19.163 kb on + strand, within CCNA_00018at 19.163 kb on + strand, within CCNA_00018at 19.192 kb on - strand, within CCNA_00018at 19.200 kb on - strand, within CCNA_00018at 19.200 kb on - strand, within CCNA_00018at 19.251 kb on - strand, within CCNA_00018at 19.315 kb on + strand, within CCNA_00018at 19.335 kb on - strand, within CCNA_00018at 19.337 kb on + strand, within CCNA_00018at 19.340 kb on - strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.416 kb on + strand, within CCNA_00018at 19.441 kb on + strand, within CCNA_00018at 19.444 kb on - strand, within CCNA_00018at 19.528 kb on + strand, within CCNA_00018at 19.561 kb on - strand, within CCNA_00018at 19.578 kb on + strand, within CCNA_00018at 19.586 kb on + strand, within CCNA_00018at 19.620 kb on + strand, within CCNA_00018at 19.640 kb on + strand, within CCNA_00018at 19.708 kb on - strandat 19.732 kb on - strandat 19.902 kb on + strand, within CCNA_00019at 19.904 kb on + strand, within CCNA_00019at 19.910 kb on - strand, within CCNA_00019at 19.937 kb on + strand, within CCNA_00019at 19.945 kb on - strand, within CCNA_00019at 20.000 kb on + strand, within CCNA_00019at 20.046 kb on + strand, within CCNA_00019at 20.170 kb on - strand, within CCNA_00019at 20.200 kb on - strand, within CCNA_00019at 20.239 kb on + strand, within CCNA_00019at 20.247 kb on - strand, within CCNA_00019at 20.247 kb on - strand, within CCNA_00019at 20.336 kb on - strand, within CCNA_00019at 20.336 kb on - strand, within CCNA_00019at 20.340 kb on - strand, within CCNA_00019at 20.355 kb on + strand, within CCNA_00019at 20.382 kb on - strand, within CCNA_00019at 20.434 kb on + strandat 20.450 kb on - strandat 20.574 kb on - strand, within CCNA_00020at 20.590 kb on - strand, within CCNA_00020at 20.678 kb on - strand, within CCNA_03911at 20.694 kb on + strand, within CCNA_03911at 20.697 kb on - strand, within CCNA_03911at 20.697 kb on - strand, within CCNA_03911at 20.738 kb on - strand, within CCNA_03911at 20.740 kb on + strand, within CCNA_03911at 20.749 kb on + strand, within CCNA_03911at 20.749 kb on + strand, within CCNA_03911at 20.754 kb on + strand, within CCNA_03911at 20.757 kb on - strand, within CCNA_03911at 20.863 kb on - strandat 20.875 kb on - strandat 20.880 kb on + strandat 20.989 kb on - strandat 21.008 kb on - strandat 21.043 kb on - strandat 21.069 kb on - strand, within CCNA_00021at 21.069 kb on - strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.091 kb on + strand, within CCNA_00021at 21.099 kb on - strand, within CCNA_00021at 21.108 kb on + strand, within CCNA_00021at 21.108 kb on + strand, within CCNA_00021at 21.156 kb on - strand, within CCNA_00021at 21.201 kb on + strand, within CCNA_00021at 21.201 kb on + strand, within CCNA_00021at 21.202 kb on - strand, within CCNA_00021at 21.208 kb on + strand, within CCNA_00021at 21.209 kb on - strand, within CCNA_00021at 21.209 kb on - strand, within CCNA_00021at 21.209 kb on - strand, within CCNA_00021at 21.209 kb on - strand, within CCNA_00021at 21.216 kb on - strand, within CCNA_00021at 21.280 kb on + strand, within CCNA_00021at 21.286 kb on + strand, within CCNA_00021at 21.291 kb on + strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.306 kb on + strand, within CCNA_00021at 21.306 kb on + strand, within CCNA_00021at 21.316 kb on - strand, within CCNA_00021at 21.316 kb on - strand, within CCNA_00021at 21.369 kb on + strand, within CCNA_00021at 21.410 kb on + strand, within CCNA_00021

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C
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18,910 - CCNA_00018 0.17 -2.4
18,920 - CCNA_00018 0.18 -0.0
18,920 - CCNA_00018 0.18 +0.2
18,933 + CCNA_00018 0.19 -0.4
18,941 - CCNA_00018 0.20 -0.6
18,941 - CCNA_00018 0.20 -1.6
18,941 - CCNA_00018 0.20 -0.2
18,989 + CCNA_00018 0.24 -2.6
18,992 - CCNA_00018 0.24 +0.4
18,995 + CCNA_00018 0.25 -1.8
19,064 + CCNA_00018 0.31 -1.9
19,105 + CCNA_00018 0.35 +0.2
19,113 - CCNA_00018 0.36 -0.2
19,113 - CCNA_00018 0.36 -0.6
19,115 + CCNA_00018 0.36 -1.3
19,115 + CCNA_00018 0.36 +0.9
19,123 - CCNA_00018 0.37 +1.0
19,123 - CCNA_00018 0.37 -0.2
19,133 - CCNA_00018 0.38 +0.0
19,133 - CCNA_00018 0.38 +0.1
19,143 - CCNA_00018 0.39 -0.8
19,143 - CCNA_00018 0.39 -0.9
19,161 - CCNA_00018 0.41 +0.6
19,161 - CCNA_00018 0.41 +0.6
19,161 - CCNA_00018 0.41 +1.8
19,163 + CCNA_00018 0.41 -0.3
19,163 + CCNA_00018 0.41 -0.7
19,192 - CCNA_00018 0.44 -1.1
19,200 - CCNA_00018 0.44 -0.6
19,200 - CCNA_00018 0.44 -0.3
19,251 - CCNA_00018 0.49 +0.5
19,315 + CCNA_00018 0.55 -0.3
19,335 - CCNA_00018 0.57 +0.0
19,337 + CCNA_00018 0.57 -1.5
19,340 - CCNA_00018 0.58 -0.3
19,342 + CCNA_00018 0.58 -3.7
19,342 + CCNA_00018 0.58 -1.9
19,342 + CCNA_00018 0.58 +0.0
19,342 + CCNA_00018 0.58 -0.3
19,416 + CCNA_00018 0.65 -1.8
19,441 + CCNA_00018 0.67 +1.2
19,444 - CCNA_00018 0.68 +0.5
19,528 + CCNA_00018 0.76 -0.0
19,561 - CCNA_00018 0.79 -0.6
19,578 + CCNA_00018 0.80 -0.5
19,586 + CCNA_00018 0.81 -1.3
19,620 + CCNA_00018 0.84 -0.2
19,640 + CCNA_00018 0.86 -1.9
19,708 - +0.0
19,732 - +0.8
19,902 + CCNA_00019 0.14 -3.1
19,904 + CCNA_00019 0.14 -1.4
19,910 - CCNA_00019 0.15 -2.4
19,937 + CCNA_00019 0.19 -2.0
19,945 - CCNA_00019 0.21 +1.0
20,000 + CCNA_00019 0.29 -2.4
20,046 + CCNA_00019 0.36 -2.0
20,170 - CCNA_00019 0.56 -0.0
20,200 - CCNA_00019 0.61 -1.0
20,239 + CCNA_00019 0.67 -0.2
20,247 - CCNA_00019 0.68 -0.7
20,247 - CCNA_00019 0.68 -0.9
20,336 - CCNA_00019 0.82 -0.5
20,336 - CCNA_00019 0.82 -0.0
20,340 - CCNA_00019 0.83 -0.3
20,355 + CCNA_00019 0.85 -0.8
20,382 - CCNA_00019 0.90 +0.4
20,434 + -2.3
20,450 - +0.4
20,574 - CCNA_00020 0.58 -0.2
20,590 - CCNA_00020 0.65 -0.7
20,678 - CCNA_03911 0.11 +2.5
20,694 + CCNA_03911 0.25 +0.5
20,697 - CCNA_03911 0.28 -2.0
20,697 - CCNA_03911 0.28 -0.2
20,738 - CCNA_03911 0.64 -1.5
20,740 + CCNA_03911 0.66 -0.5
20,749 + CCNA_03911 0.74 -1.6
20,749 + CCNA_03911 0.74 -2.5
20,754 + CCNA_03911 0.78 -2.4
20,757 - CCNA_03911 0.81 -1.6
20,863 - -0.4
20,875 - -2.0
20,880 + +1.2
20,989 - +0.7
21,008 - -1.0
21,043 - +0.0
21,069 - CCNA_00021 0.10 +0.4
21,069 - CCNA_00021 0.10 +0.4
21,091 + CCNA_00021 0.11 +0.2
21,091 + CCNA_00021 0.11 +0.4
21,091 + CCNA_00021 0.11 -1.2
21,091 + CCNA_00021 0.11 -1.9
21,091 + CCNA_00021 0.11 -0.0
21,091 + CCNA_00021 0.11 -1.0
21,091 + CCNA_00021 0.11 -2.3
21,099 - CCNA_00021 0.12 -0.2
21,108 + CCNA_00021 0.12 -0.4
21,108 + CCNA_00021 0.12 -0.9
21,156 - CCNA_00021 0.14 -0.7
21,201 + CCNA_00021 0.16 +0.2
21,201 + CCNA_00021 0.16 -1.5
21,202 - CCNA_00021 0.17 -1.1
21,208 + CCNA_00021 0.17 -2.4
21,209 - CCNA_00021 0.17 -1.1
21,209 - CCNA_00021 0.17 -2.5
21,209 - CCNA_00021 0.17 -0.6
21,209 - CCNA_00021 0.17 -0.2
21,216 - CCNA_00021 0.17 -2.4
21,280 + CCNA_00021 0.20 -0.2
21,286 + CCNA_00021 0.20 -0.1
21,291 + CCNA_00021 0.21 -0.5
21,299 - CCNA_00021 0.21 -1.2
21,299 - CCNA_00021 0.21 -1.2
21,299 - CCNA_00021 0.21 -0.7
21,299 - CCNA_00021 0.21 -0.2
21,299 - CCNA_00021 0.21 -0.4
21,306 + CCNA_00021 0.21 -1.0
21,306 + CCNA_00021 0.21 -0.3
21,316 - CCNA_00021 0.22 +0.3
21,316 - CCNA_00021 0.22 -0.2
21,369 + CCNA_00021 0.24 -0.3
21,410 + CCNA_00021 0.26 +0.2

Or see this region's nucleotide sequence