Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5112

Experiment: Succinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid (C)
6,062,869	+				+0.0
6,062,870	-				-0.6
6,062,878	+				+0.5
6,062,879	-				+1.0
6,062,879	-				+0.1
6,062,879	-				-0.5
6,062,879	-				+0.1
6,062,882	+				-0.3
6,062,882	+				+1.0
6,062,882	+				-0.4
6,062,883	-				+1.0
6,062,883	-				-0.7
6,062,883	-				+0.7
6,062,887	+				+0.7
6,062,887	+				+0.5
6,062,888	-				-0.2
6,062,888	-				+0.8
6,062,888	-				-0.1
6,062,888	-				+1.0
6,062,920	-				-0.6
6,062,920	-				-2.0
6,062,920	-				+0.9
6,062,944	-				+2.0
6,062,951	-				+0.2
6,062,969	+				+0.5
6,062,970	-				+0.6
6,062,977	-				+0.0
6,062,977	-				-0.6
6,062,977	-				+0.4
6,063,083	-				-3.0
6,063,112	+				+0.1
6,063,112	+				+0.4
6,063,123	+		Psyr_5111	0.11	-1.6
6,063,130	+		Psyr_5111	0.12	-1.7
6,063,130	+		Psyr_5111	0.12	-0.8
6,063,130	+		Psyr_5111	0.12	-0.4
6,063,130	+		Psyr_5111	0.12	-0.4
6,063,130	+		Psyr_5111	0.12	+2.2
6,063,130	+		Psyr_5111	0.12	-0.7
6,063,130	+		Psyr_5111	0.12	+1.4
6,063,130	+		Psyr_5111	0.12	+0.8
6,063,130	+		Psyr_5111	0.12	+1.1
6,063,130	+		Psyr_5111	0.12	-1.0
6,063,130	+		Psyr_5111	0.12	-0.4
6,063,130	+		Psyr_5111	0.12	-0.5
6,063,130	+		Psyr_5111	0.12	-0.3
6,063,130	+		Psyr_5111	0.12	+1.0
6,063,130	+		Psyr_5111	0.12	-0.3
6,063,130	+		Psyr_5111	0.12	+0.7
6,063,130	+		Psyr_5111	0.12	-1.0
6,063,130	+		Psyr_5111	0.12	+0.2
6,063,130	+		Psyr_5111	0.12	+0.4
6,063,130	+		Psyr_5111	0.12	+0.7
6,063,130	+		Psyr_5111	0.12	-1.2
6,063,130	+		Psyr_5111	0.12	+1.6
6,063,130	+		Psyr_5111	0.12	-2.4
6,063,130	+		Psyr_5111	0.12	+0.4
6,063,130	+		Psyr_5111	0.12	-0.6
6,063,130	+		Psyr_5111	0.12	-0.6
6,063,130	+		Psyr_5111	0.12	+1.8
6,063,130	+		Psyr_5111	0.12	+0.4
6,063,130	+		Psyr_5111	0.12	+0.2
6,063,130	+		Psyr_5111	0.12	+1.0
6,063,130	+		Psyr_5111	0.12	+1.1
6,063,131	-		Psyr_5111	0.12	+0.2
6,063,131	-		Psyr_5111	0.12	+1.4
6,063,131	-		Psyr_5111	0.12	+0.1
6,063,131	-		Psyr_5111	0.12	-0.8
6,063,131	-		Psyr_5111	0.12	+1.0
6,063,131	-		Psyr_5111	0.12	-0.6
6,063,131	-		Psyr_5111	0.12	+0.2
6,063,131	-		Psyr_5111	0.12	+0.4
6,063,131	-		Psyr_5111	0.12	+1.0
6,063,131	-		Psyr_5111	0.12	-0.6
6,063,131	-		Psyr_5111	0.12	-0.1
6,063,131	-		Psyr_5111	0.12	-0.4
6,063,131	-		Psyr_5111	0.12	+1.1
6,063,131	-		Psyr_5111	0.12	-2.5
6,063,131	-		Psyr_5111	0.12	-1.2
6,063,131	-		Psyr_5111	0.12	-0.4
6,063,131	-		Psyr_5111	0.12	-0.4
6,063,131	-		Psyr_5111	0.12	+1.2
6,063,131	-		Psyr_5111	0.12	+0.7
6,063,131	-		Psyr_5111	0.12	+0.0
6,063,131	-		Psyr_5111	0.12	-0.1
6,063,131	-		Psyr_5111	0.12	+0.2
6,063,131	-		Psyr_5111	0.12	-0.6
6,063,131	-		Psyr_5111	0.12	-0.4
6,063,131	-		Psyr_5111	0.12	+0.1
6,063,131	-		Psyr_5111	0.12	-1.6
6,063,131	-		Psyr_5111	0.12	+0.0
6,063,131	-		Psyr_5111	0.12	-0.5
6,063,131	-		Psyr_5111	0.12	+0.2
6,063,131	-		Psyr_5111	0.12	+0.8
6,063,132	+		Psyr_5111	0.12	+0.5
6,063,132	+		Psyr_5111	0.12	+0.7
6,063,133	-		Psyr_5111	0.12	-0.2
6,063,133	-		Psyr_5111	0.12	-1.6
6,063,207	+		Psyr_5111	0.22	+0.7
6,063,207	+		Psyr_5111	0.22	-2.1
6,063,208	-		Psyr_5111	0.22	-1.1
6,063,208	-		Psyr_5111	0.22	+1.3
6,063,244	+		Psyr_5111	0.27	-0.5
6,063,245	-		Psyr_5111	0.28	+2.1
6,063,260	+		Psyr_5111	0.30	+1.1
6,063,261	-		Psyr_5111	0.30	+0.5
6,063,341	+		Psyr_5111	0.41	-0.0
6,063,400	+		Psyr_5111	0.49	-2.0
6,063,400	+		Psyr_5111	0.49	-2.6
6,063,400	+		Psyr_5111	0.49	-0.0
6,063,400	+		Psyr_5111	0.49	-0.4
6,063,444	+		Psyr_5111	0.55	+1.0
6,063,445	-		Psyr_5111	0.55	+0.1
6,063,445	-		Psyr_5111	0.55	+0.7
6,063,470	-		Psyr_5111	0.59	+0.2
6,063,470	-		Psyr_5111	0.59	-0.8
6,063,470	-		Psyr_5111	0.59	+0.7
6,063,470	-		Psyr_5111	0.59	+0.1
6,063,470	-		Psyr_5111	0.59	-1.0
6,063,567	+		Psyr_5111	0.72	-0.2
6,063,568	-		Psyr_5111	0.72	+0.5
6,063,579	+		Psyr_5111	0.74	-0.4
6,063,579	+		Psyr_5111	0.74	+0.5
6,063,579	+		Psyr_5111	0.74	-0.4
6,063,579	+		Psyr_5111	0.74	-3.0
6,063,579	+		Psyr_5111	0.74	-0.2
6,063,579	+		Psyr_5111	0.74	+0.4
6,063,579	+		Psyr_5111	0.74	+1.5
6,063,580	-		Psyr_5111	0.74	+0.3
6,063,580	-		Psyr_5111	0.74	-0.4
6,063,580	-		Psyr_5111	0.74	-0.3
6,063,625	+		Psyr_5111	0.80	+0.8
6,063,626	-		Psyr_5111	0.80	+0.2
6,063,626	-		Psyr_5111	0.80	+0.5
6,063,631	+		Psyr_5111	0.81	-2.8
6,063,631	+		Psyr_5111	0.81	-0.1
6,063,631	+		Psyr_5111	0.81	+0.0
6,063,631	+		Psyr_5111	0.81	-1.1
6,063,631	+		Psyr_5111	0.81	-1.4
6,063,631	+		Psyr_5111	0.81	-0.3
6,063,631	+		Psyr_5111	0.81	+1.2
6,063,631	+		Psyr_5111	0.81	+0.9
6,063,632	-		Psyr_5111	0.81	+0.7
6,063,632	-		Psyr_5111	0.81	+2.0
6,063,632	-		Psyr_5111	0.81	-1.6
6,063,632	-		Psyr_5111	0.81	+2.0
6,063,632	-		Psyr_5111	0.81	-2.2
6,063,632	-		Psyr_5111	0.81	-0.6
6,063,632	-		Psyr_5111	0.81	-1.0
6,063,632	-		Psyr_5111	0.81	+0.4
6,063,632	-		Psyr_5111	0.81	-0.3
6,063,653	-		Psyr_5111	0.84	-1.0
6,063,684	-		Psyr_5111	0.88	+1.0
6,063,689	+		Psyr_5111	0.89	-0.6
6,063,690	-		Psyr_5111	0.89	-0.2
6,063,690	-		Psyr_5111	0.89	+1.8
6,063,690	-		Psyr_5111	0.89	+1.0
6,063,693	-		Psyr_5111	0.89	-1.0
6,063,693	-		Psyr_5111	0.89	-0.6
6,063,740	-				+0.5
6,063,755	+				-2.0
6,063,756	-				+1.0
6,063,785	+				-0.9
6,063,785	+				+1.2
6,063,785	+				+1.1
6,063,785	+				+0.8
6,063,786	-				+0.1
6,063,786	-				-1.0
6,063,793	-				+0.5
6,063,809	+				+0.6
6,063,809	+				-1.5
6,063,810	-				-0.4
6,063,810	-				+2.4
6,063,810	-				+0.1
6,063,810	-				+0.5
6,063,839	+				+1.0
6,063,839	+				+0.2
6,063,839	+				-1.1
6,063,839	+				+0.4
6,063,839	+				+1.3
6,063,839	+				+0.2
6,063,839	+				+0.8
6,063,839	+				+1.8
6,063,840	-				-1.2
6,063,840	-				-1.3
6,063,840	-				-0.0
6,063,840	-				+2.5
6,063,840	-				+1.4
6,063,840	-				-0.9
6,063,840	-				-0.7
6,063,840	-				+0.0
6,063,840	-				-0.9
6,063,840	-				-0.6
6,063,840	-				+0.0
6,063,840	-				-0.0
6,063,840	-				-1.0
6,063,840	-				+0.1
6,063,869	-				+1.3
6,063,900	+				+0.7
6,063,901	-				-0.7
6,063,901	-				+0.6
6,063,901	-				-0.1
6,063,901	-				+3.5
6,063,960	+		Psyr_5112	0.11	+0.7
6,063,961	-		Psyr_5112	0.11	+0.7
6,064,075	+		Psyr_5112	0.25	-0.0
6,064,075	+		Psyr_5112	0.25	+0.7
6,064,075	+		Psyr_5112	0.25	+0.0
6,064,075	+		Psyr_5112	0.25	+0.0
6,064,076	-		Psyr_5112	0.25	-2.0
6,064,107	+		Psyr_5112	0.29	-0.2
6,064,107	+		Psyr_5112	0.29	+1.5
6,064,107	+		Psyr_5112	0.29	+0.5
6,064,107	+		Psyr_5112	0.29	+0.6
6,064,224	+		Psyr_5112	0.43	+0.2
6,064,224	+		Psyr_5112	0.43	-1.2
6,064,225	-		Psyr_5112	0.43	+0.5
6,064,225	-		Psyr_5112	0.43	+0.0
6,064,225	-		Psyr_5112	0.43	+0.7
6,064,225	-		Psyr_5112	0.43	-1.0
6,064,225	-		Psyr_5112	0.43	-0.6
6,064,273	+		Psyr_5112	0.49	+2.0
6,064,273	+		Psyr_5112	0.49	-0.2
6,064,273	+		Psyr_5112	0.49	-0.4
6,064,273	+		Psyr_5112	0.49	-0.4
6,064,273	+		Psyr_5112	0.49	+3.2
6,064,274	-		Psyr_5112	0.49	-0.5
6,064,274	-		Psyr_5112	0.49	-0.0
6,064,274	-		Psyr_5112	0.49	+0.4
6,064,274	-		Psyr_5112	0.49	+0.4
6,064,276	+		Psyr_5112	0.50	+0.4
6,064,276	+		Psyr_5112	0.50	+0.1
6,064,276	+		Psyr_5112	0.50	+0.4
6,064,276	+		Psyr_5112	0.50	+0.2
6,064,276	+		Psyr_5112	0.50	+1.2
6,064,276	+		Psyr_5112	0.50	-1.6
6,064,277	-		Psyr_5112	0.50	-0.6
6,064,281	+		Psyr_5112	0.50	+1.0
6,064,281	+		Psyr_5112	0.50	+0.6
6,064,281	+		Psyr_5112	0.50	-0.8
6,064,282	-		Psyr_5112	0.50	+0.7
6,064,282	-		Psyr_5112	0.50	-0.6
6,064,282	-		Psyr_5112	0.50	+1.2
6,064,282	-		Psyr_5112	0.50	-0.6
6,064,282	-		Psyr_5112	0.50	+0.0
6,064,282	-		Psyr_5112	0.50	-0.2
6,064,282	-		Psyr_5112	0.50	+0.4
6,064,282	-		Psyr_5112	0.50	-0.2
6,064,307	+		Psyr_5112	0.53	+0.3
6,064,307	+		Psyr_5112	0.53	+1.0
6,064,307	+		Psyr_5112	0.53	+2.0
6,064,307	+		Psyr_5112	0.53	-1.5
6,064,308	-		Psyr_5112	0.53	+1.5
6,064,308	-		Psyr_5112	0.53	+0.5
6,064,370	+		Psyr_5112	0.61	+0.2
6,064,370	+		Psyr_5112	0.61	+1.2
6,064,370	+		Psyr_5112	0.61	+0.4
6,064,371	-		Psyr_5112	0.61	+0.6
6,064,633	+				+0.5
6,064,633	+				+0.4
6,064,633	+				+0.4
6,064,633	+				-0.3
6,064,633	+				+1.5
6,064,634	-				+1.0
6,064,634	-				+0.0
6,064,634	-				+0.4
6,064,637	+				+0.9
6,064,637	+				+1.4
6,064,638	-				-0.6
6,064,638	-				-0.5
6,064,656	+				+0.1
6,064,659	+				-1.3
6,064,659	+				+1.5
6,064,660	-				-0.2
6,064,768	+				-1.2
6,064,778	-				+0.4
6,064,831	+				+0.4
6,064,832	-				+2.0
6,064,832	-				-0.2
6,064,850	+				+0.6
6,064,850	+				+1.1
6,064,850	+				-0.3
6,064,851	-				-3.3
6,064,851	-				-0.9
6,064,851	-				+1.8
6,064,851	-				+0.4
6,064,851	-				-1.6
6,064,851	-				+0.4
6,064,851	-				+1.4
6,064,851	-				-0.0
6,064,869	+				-2.2
6,064,869	+				-1.2
6,064,872	+				-0.6
6,064,872	+				+0.1
6,064,872	+				-0.9
6,064,872	+				+1.3
6,064,872	+				+1.0
6,064,873	-				-0.9
6,064,873	-				-1.5
6,064,873	-				-1.0
6,064,873	-				+0.9
6,064,873	-				+0.6
6,064,873	-				-0.5
6,064,873	-				-0.4
6,065,003	+				+0.3
6,065,012	-				-0.2
6,065,116	-				+0.2
6,065,123	+				+1.0
6,065,123	+				+1.4
6,065,123	+				+0.2
6,065,150	+				+1.1
6,065,151	-				-1.2
6,065,155	+				+0.4
6,065,155	+				-1.0
6,065,155	+				+0.1
6,065,155	+				+0.2
6,065,156	-				+0.7
6,065,156	-				+0.5
6,065,161	+				+0.6
6,065,173	+				+0.5
6,065,173	+				-1.4
6,065,173	+				-0.2
6,065,173	+				+1.1
6,065,174	-				+2.2
6,065,174	-				-0.4
6,065,174	-				+0.6
6,065,261	+				-0.4
6,065,261	+				+0.1
6,065,261	+				-0.4
6,065,262	-				+0.8
6,065,282	+				+0.4
6,065,282	+				+0.7
6,065,283	-				+1.2
6,065,283	-				-0.6
6,065,283	-				-0.5
6,065,398	+				-0.6
6,065,398	+				+2.2
6,065,399	-				+0.0
6,065,399	-				+0.2
6,065,450	+				+1.6
6,065,450	+				+0.2
6,065,450	+				-0.1
6,065,451	-				-0.8
6,065,462	+				+0.4
6,065,462	+				+0.6
6,065,462	+				+0.6
6,065,462	+				+0.4
6,065,462	+				-0.2
6,065,462	+				+0.7
6,065,462	+				+0.6
6,065,462	+				-0.0
6,065,463	-				-1.3
6,065,463	-				+0.2
6,065,463	-				+0.0
6,065,463	-				-0.6
6,065,463	-				+0.6
6,065,463	-				+0.1
6,065,463	-				-0.6
6,065,463	-				+0.4
6,065,463	-				-0.6
6,065,484	+				+0.2
6,065,484	+				+0.9
6,065,484	+				+0.4
6,065,484	+				+0.8
6,065,484	+				-0.9
6,065,484	+				+0.4
6,065,484	+				+0.4
6,065,484	+				-1.0
6,065,484	+				+0.4
6,065,484	+				+0.4
6,065,484	+				+0.7
6,065,484	+				+0.1
6,065,484	+				-0.6
6,065,484	+				-2.1
6,065,484	+				+0.4
6,065,484	+				+0.4
6,065,484	+				+0.3
6,065,484	+				-0.2
6,065,485	-				+1.0
6,065,485	-				+0.0
6,065,485	-				-0.1
6,065,485	-				-0.1
6,065,485	-				+1.6
6,065,485	-				+0.7
6,065,485	-				+0.2
6,065,485	-				+0.5
6,065,485	-				+0.4
6,065,485	-				+0.4
6,065,485	-				+0.4
6,065,485	-				-0.2
6,065,485	-				+0.0
6,065,485	-				-0.3
6,065,485	-				-0.6
6,065,503	+				-2.1
6,065,503	+				+0.7
6,065,503	+				+1.2
6,065,504	-				+1.4
6,065,504	-				-1.2