Experiment: Succinic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5008 and Psyr_5009 are separated by 818 nucleotides Psyr_5009 and Psyr_5010 are separated by 42 nucleotides Psyr_5010 and Psyr_5011 overlap by 4 nucleotides
Psyr_5008: Psyr_5008 - transcriptional regulator, GntR family, at 5,940,336 to 5,941,073
_5008
Psyr_5009: Psyr_5009 - conserved hypothetical protein, at 5,941,892 to 5,942,668
_5009
Psyr_5010: Psyr_5010 - conserved hypothetical protein, at 5,942,711 to 5,943,658
_5010
Psyr_5011: Psyr_5011 - Amino acid adenylation:Thioester reductase, at 5,943,655 to 5,947,101
_5011
Position (kb) 5941
5942
5943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5941.167 kb on - strand at 5941.198 kb on + strand at 5941.204 kb on + strand at 5941.204 kb on + strand at 5941.204 kb on + strand at 5941.205 kb on - strand at 5941.491 kb on - strand at 5941.589 kb on - strand at 5941.802 kb on - strand at 5941.805 kb on - strand at 5941.977 kb on + strand, within Psyr_5009 at 5941.977 kb on + strand, within Psyr_5009 at 5941.991 kb on - strand, within Psyr_5009 at 5942.004 kb on + strand, within Psyr_5009 at 5942.004 kb on + strand, within Psyr_5009 at 5942.005 kb on - strand, within Psyr_5009 at 5942.005 kb on - strand, within Psyr_5009 at 5942.165 kb on + strand, within Psyr_5009 at 5942.165 kb on + strand, within Psyr_5009 at 5942.166 kb on - strand, within Psyr_5009 at 5942.166 kb on - strand, within Psyr_5009 at 5942.183 kb on + strand, within Psyr_5009 at 5942.183 kb on + strand, within Psyr_5009 at 5942.183 kb on + strand, within Psyr_5009 at 5942.184 kb on - strand, within Psyr_5009 at 5942.265 kb on - strand, within Psyr_5009 at 5942.468 kb on + strand, within Psyr_5009 at 5942.468 kb on + strand, within Psyr_5009 at 5942.469 kb on - strand, within Psyr_5009 at 5942.469 kb on - strand, within Psyr_5009 at 5942.573 kb on + strand, within Psyr_5009 at 5942.573 kb on + strand, within Psyr_5009 at 5942.573 kb on + strand, within Psyr_5009 at 5942.573 kb on + strand, within Psyr_5009 at 5942.696 kb on + strand at 5942.696 kb on + strand at 5942.696 kb on + strand at 5942.696 kb on + strand at 5942.696 kb on + strand at 5942.696 kb on + strand at 5942.697 kb on - strand at 5942.697 kb on - strand at 5942.697 kb on - strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.726 kb on + strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.727 kb on - strand at 5942.813 kb on + strand, within Psyr_5010 at 5942.813 kb on + strand, within Psyr_5010 at 5942.813 kb on + strand, within Psyr_5010 at 5942.814 kb on - strand, within Psyr_5010 at 5942.839 kb on - strand, within Psyr_5010 at 5942.903 kb on + strand, within Psyr_5010 at 5942.903 kb on + strand, within Psyr_5010 at 5942.903 kb on + strand, within Psyr_5010 at 5942.904 kb on - strand, within Psyr_5010 at 5943.012 kb on - strand, within Psyr_5010 at 5943.012 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.098 kb on - strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.350 kb on + strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.351 kb on - strand, within Psyr_5010 at 5943.419 kb on + strand, within Psyr_5010 at 5943.420 kb on - strand, within Psyr_5010 at 5943.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid (C) remove 5,941,167 - +1.3 5,941,198 + -0.2 5,941,204 + -1.4 5,941,204 + -1.6 5,941,204 + -2.0 5,941,205 - +1.1 5,941,491 - -1.2 5,941,589 - -0.5 5,941,802 - +0.4 5,941,805 - -1.0 5,941,977 + Psyr_5009 0.11 +0.1 5,941,977 + Psyr_5009 0.11 +0.1 5,941,991 - Psyr_5009 0.13 -0.8 5,942,004 + Psyr_5009 0.14 +0.4 5,942,004 + Psyr_5009 0.14 -2.2 5,942,005 - Psyr_5009 0.15 -1.0 5,942,005 - Psyr_5009 0.15 -1.0 5,942,165 + Psyr_5009 0.35 +0.3 5,942,165 + Psyr_5009 0.35 -0.9 5,942,166 - Psyr_5009 0.35 -2.0 5,942,166 - Psyr_5009 0.35 -0.3 5,942,183 + Psyr_5009 0.37 -0.0 5,942,183 + Psyr_5009 0.37 -0.2 5,942,183 + Psyr_5009 0.37 +0.0 5,942,184 - Psyr_5009 0.38 -0.1 5,942,265 - Psyr_5009 0.48 -1.1 5,942,468 + Psyr_5009 0.74 -0.6 5,942,468 + Psyr_5009 0.74 -0.5 5,942,469 - Psyr_5009 0.74 -0.3 5,942,469 - Psyr_5009 0.74 +0.7 5,942,573 + Psyr_5009 0.88 +0.0 5,942,573 + Psyr_5009 0.88 -0.6 5,942,573 + Psyr_5009 0.88 -0.0 5,942,573 + Psyr_5009 0.88 -0.2 5,942,696 + +0.4 5,942,696 + -0.0 5,942,696 + -0.2 5,942,696 + -0.4 5,942,696 + +0.6 5,942,696 + +2.4 5,942,697 - -0.5 5,942,697 - +0.9 5,942,697 - +0.4 5,942,726 + -0.1 5,942,726 + -1.1 5,942,726 + +0.7 5,942,726 + -0.3 5,942,726 + +0.4 5,942,726 + +0.4 5,942,726 + -0.4 5,942,726 + -0.0 5,942,726 + +0.9 5,942,726 + +0.4 5,942,726 + +0.3 5,942,726 + -2.7 5,942,727 - -0.7 5,942,727 - -1.5 5,942,727 - -0.9 5,942,727 - +0.6 5,942,727 - -2.1 5,942,727 - -0.1 5,942,727 - -0.4 5,942,727 - -0.6 5,942,727 - -0.5 5,942,727 - +0.1 5,942,727 - +0.1 5,942,727 - +0.8 5,942,727 - -0.3 5,942,727 - +0.3 5,942,727 - +0.6 5,942,727 - +0.8 5,942,727 - -0.2 5,942,727 - -0.1 5,942,727 - +0.4 5,942,813 + Psyr_5010 0.11 -1.2 5,942,813 + Psyr_5010 0.11 +0.7 5,942,813 + Psyr_5010 0.11 -0.2 5,942,814 - Psyr_5010 0.11 +1.5 5,942,839 - Psyr_5010 0.14 +0.3 5,942,903 + Psyr_5010 0.20 +0.2 5,942,903 + Psyr_5010 0.20 -1.2 5,942,903 + Psyr_5010 0.20 -3.1 5,942,904 - Psyr_5010 0.20 -0.2 5,943,012 - Psyr_5010 0.32 +0.6 5,943,012 - Psyr_5010 0.32 +1.4 5,943,098 - Psyr_5010 0.41 +0.2 5,943,098 - Psyr_5010 0.41 +2.5 5,943,098 - Psyr_5010 0.41 -0.8 5,943,098 - Psyr_5010 0.41 +1.2 5,943,098 - Psyr_5010 0.41 +0.6 5,943,098 - Psyr_5010 0.41 -0.2 5,943,098 - Psyr_5010 0.41 +0.8 5,943,098 - Psyr_5010 0.41 +0.5 5,943,350 + Psyr_5010 0.67 -1.4 5,943,350 + Psyr_5010 0.67 -1.7 5,943,350 + Psyr_5010 0.67 -0.2 5,943,350 + Psyr_5010 0.67 +3.0 5,943,350 + Psyr_5010 0.67 -0.5 5,943,350 + Psyr_5010 0.67 +0.4 5,943,351 - Psyr_5010 0.68 -0.6 5,943,351 - Psyr_5010 0.68 -1.0 5,943,351 - Psyr_5010 0.68 -0.8 5,943,351 - Psyr_5010 0.68 -0.2 5,943,351 - Psyr_5010 0.68 -0.2 5,943,351 - Psyr_5010 0.68 +1.4 5,943,351 - Psyr_5010 0.68 +2.4 5,943,351 - Psyr_5010 0.68 +0.1 5,943,351 - Psyr_5010 0.68 +3.4 5,943,351 - Psyr_5010 0.68 -0.3 5,943,419 + Psyr_5010 0.75 -1.5 5,943,420 - Psyr_5010 0.75 -0.0 5,943,629 + -0.0
Or see this region's nucleotide sequence