Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4962

Experiment: Succinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid (C)
5,881,342	+				-0.9
5,881,342	+				-0.2
5,881,342	+				-0.9
5,881,342	+				+0.2
5,881,342	+				-0.7
5,881,342	+				-0.7
5,881,343	-				+0.2
5,881,343	-				+1.2
5,881,343	-				-0.2
5,881,343	-				-1.1
5,881,343	-				-1.2
5,881,372	+				+0.4
5,881,373	-				+0.7
5,881,373	-				-0.7
5,881,409	-				+0.1
5,881,426	-				-0.4
5,881,458	+				-1.1
5,881,458	+				+0.2
5,881,459	-				+0.4
5,881,459	-				+0.7
5,881,459	-				+1.6
5,881,511	+				+1.3
5,881,511	+				-2.1
5,881,511	+				-0.7
5,881,512	-				+0.1
5,881,512	-				+0.2
5,881,512	-				-1.2
5,881,653	+		Psyr_4961	0.27	+0.0
5,881,653	+		Psyr_4961	0.27	-0.2
5,881,653	+		Psyr_4961	0.27	+0.2
5,881,653	+		Psyr_4961	0.27	+0.5
5,881,653	+		Psyr_4961	0.27	+0.1
5,881,653	+		Psyr_4961	0.27	+0.2
5,881,654	-		Psyr_4961	0.27	-0.2
5,881,654	-		Psyr_4961	0.27	+0.6
5,881,684	-		Psyr_4961	0.31	+0.2
5,881,776	+		Psyr_4961	0.44	-1.1
5,881,777	-		Psyr_4961	0.44	+0.1
5,881,869	+		Psyr_4961	0.57	-0.4
5,882,053	+		Psyr_4961	0.83	+2.3
5,882,062	-		Psyr_4961	0.84	+1.2
5,882,083	+		Psyr_4961	0.87	+0.1
5,882,084	-		Psyr_4961	0.87	+0.1
5,882,084	-		Psyr_4961	0.87	+0.3
5,882,084	-		Psyr_4961	0.87	-0.7
5,882,097	+		Psyr_4961	0.89	+0.3
5,882,098	-		Psyr_4961	0.89	+0.2
5,882,216	-				+0.9
5,882,216	-				-0.7
5,882,355	+				-0.8
5,882,356	-				-3.2
5,882,356	-				-1.7
5,882,382	+				-0.4
5,882,575	-				+0.7
5,882,694	+		Psyr_4962	0.12	+0.3
5,882,694	+		Psyr_4962	0.12	+0.4
5,882,694	+		Psyr_4962	0.12	+0.3
5,882,695	-		Psyr_4962	0.12	+1.3
5,882,695	-		Psyr_4962	0.12	+0.6
5,882,695	-		Psyr_4962	0.12	-0.4
5,882,695	-		Psyr_4962	0.12	+3.2
5,882,736	+		Psyr_4962	0.14	+0.1
5,882,916	+		Psyr_4962	0.18	-0.2
5,882,916	+		Psyr_4962	0.18	+0.7
5,882,916	+		Psyr_4962	0.18	-0.7
5,882,917	-		Psyr_4962	0.18	+0.2
5,882,949	+		Psyr_4962	0.19	-2.0
5,882,949	+		Psyr_4962	0.19	+1.3
5,882,949	+		Psyr_4962	0.19	-0.2
5,882,950	-		Psyr_4962	0.19	+0.1
5,882,950	-		Psyr_4962	0.19	+1.2
5,883,195	+		Psyr_4962	0.25	-0.0
5,883,195	+		Psyr_4962	0.25	-0.1
5,883,195	+		Psyr_4962	0.25	+2.8
5,883,195	+		Psyr_4962	0.25	-0.3
5,883,196	-		Psyr_4962	0.25	+1.9
5,883,196	-		Psyr_4962	0.25	+0.5
5,883,196	-		Psyr_4962	0.25	+0.7
5,883,218	-		Psyr_4962	0.26	-0.2
5,883,263	+		Psyr_4962	0.27	+1.7
5,883,263	+		Psyr_4962	0.27	-0.4
5,883,288	+		Psyr_4962	0.28	+0.4
5,883,288	+		Psyr_4962	0.28	-1.4
5,883,289	-		Psyr_4962	0.28	-0.3
5,883,333	+		Psyr_4962	0.29	+0.0
5,883,333	+		Psyr_4962	0.29	-0.7
5,883,333	+		Psyr_4962	0.29	-0.5
5,883,333	+		Psyr_4962	0.29	+0.7
5,883,333	+		Psyr_4962	0.29	+0.7
5,883,334	-		Psyr_4962	0.29	+1.8
5,883,441	+		Psyr_4962	0.31	+0.3
5,883,441	+		Psyr_4962	0.31	+1.5
5,883,441	+		Psyr_4962	0.31	+0.3
5,883,441	+		Psyr_4962	0.31	+0.6
5,883,442	-		Psyr_4962	0.31	-1.7
5,883,442	-		Psyr_4962	0.31	+0.7
5,883,442	-		Psyr_4962	0.31	+1.0
5,883,442	-		Psyr_4962	0.31	-0.1
5,883,499	-		Psyr_4962	0.33	+0.8
5,883,499	-		Psyr_4962	0.33	+0.1
5,883,527	+		Psyr_4962	0.34	+1.2
5,883,528	-		Psyr_4962	0.34	-0.1
5,883,791	+		Psyr_4962	0.40	-2.2
5,883,795	+		Psyr_4962	0.40	+0.7
5,883,795	+		Psyr_4962	0.40	+0.8
5,883,795	+		Psyr_4962	0.40	+0.1
5,883,795	+		Psyr_4962	0.40	-0.2
5,883,795	+		Psyr_4962	0.40	-0.7
5,883,795	+		Psyr_4962	0.40	+0.1
5,883,796	-		Psyr_4962	0.40	+0.6
5,883,796	-		Psyr_4962	0.40	-0.1
5,883,796	-		Psyr_4962	0.40	-0.4
5,883,796	-		Psyr_4962	0.40	+1.0
5,883,796	-		Psyr_4962	0.40	-0.2
5,884,257	+		Psyr_4962	0.52	+0.9
5,884,257	+		Psyr_4962	0.52	+0.3
5,884,257	+		Psyr_4962	0.52	+0.6
5,884,257	+		Psyr_4962	0.52	-0.7
5,884,257	+		Psyr_4962	0.52	+0.2
5,884,257	+		Psyr_4962	0.52	+1.5
5,884,257	+		Psyr_4962	0.52	+0.4
5,884,258	-		Psyr_4962	0.52	+1.9
5,884,258	-		Psyr_4962	0.52	+0.5
5,884,258	-		Psyr_4962	0.52	-0.8
5,884,258	-		Psyr_4962	0.52	-0.9
5,884,258	-		Psyr_4962	0.52	-0.0
5,884,258	-		Psyr_4962	0.52	-1.7
5,884,258	-		Psyr_4962	0.52	-0.1
5,884,258	-		Psyr_4962	0.52	-1.4
5,884,258	-		Psyr_4962	0.52	-0.4
5,884,258	-		Psyr_4962	0.52	-0.2
5,884,258	-		Psyr_4962	0.52	+0.4
5,884,410	+		Psyr_4962	0.56	-0.7
5,884,410	+		Psyr_4962	0.56	-1.0
5,884,410	+		Psyr_4962	0.56	+0.3
5,884,411	-		Psyr_4962	0.56	+0.3
5,884,411	-		Psyr_4962	0.56	+0.3
5,884,411	-		Psyr_4962	0.56	+0.9
5,884,411	-		Psyr_4962	0.56	-2.0
5,884,411	-		Psyr_4962	0.56	-1.5
5,884,411	-		Psyr_4962	0.56	-2.0
5,884,414	+		Psyr_4962	0.56	-0.5
5,884,414	+		Psyr_4962	0.56	-1.8
5,884,414	+		Psyr_4962	0.56	-0.6
5,884,414	+		Psyr_4962	0.56	-0.6
5,884,414	+		Psyr_4962	0.56	+0.0
5,884,414	+		Psyr_4962	0.56	+1.3
5,884,414	+		Psyr_4962	0.56	-1.2
5,884,414	+		Psyr_4962	0.56	-1.2
5,884,414	+		Psyr_4962	0.56	+1.3
5,884,415	-		Psyr_4962	0.56	+0.1
5,884,415	-		Psyr_4962	0.56	+1.9
5,884,415	-		Psyr_4962	0.56	-0.7
5,884,415	-		Psyr_4962	0.56	+0.7
5,884,415	-		Psyr_4962	0.56	+0.7
5,884,415	-		Psyr_4962	0.56	-0.3
5,884,415	-		Psyr_4962	0.56	+0.1
5,884,415	-		Psyr_4962	0.56	+0.3
5,884,415	-		Psyr_4962	0.56	+1.3
5,884,415	-		Psyr_4962	0.56	+2.7
5,884,415	-		Psyr_4962	0.56	+0.5
5,884,415	-		Psyr_4962	0.56	+0.3
5,884,531	-		Psyr_4962	0.59	+2.1
5,884,531	-		Psyr_4962	0.59	+0.6
5,884,531	-		Psyr_4962	0.59	+0.7
5,884,617	+		Psyr_4962	0.61	+0.6
5,884,618	-		Psyr_4962	0.61	+1.7
5,884,618	-		Psyr_4962	0.61	+0.2
5,884,809	+		Psyr_4962	0.66	+0.5
5,884,825	-		Psyr_4962	0.67	-0.9
5,884,849	+		Psyr_4962	0.67	+0.5
5,884,850	-		Psyr_4962	0.67	+1.0
5,884,850	-		Psyr_4962	0.67	-0.8
5,884,850	-		Psyr_4962	0.67	-0.3
5,885,068	+		Psyr_4962	0.73	+0.2
5,885,069	-		Psyr_4962	0.73	+0.8
5,885,204	+		Psyr_4962	0.76	-0.2
5,885,204	+		Psyr_4962	0.76	-0.5
5,885,205	-		Psyr_4962	0.76	-0.8
5,885,205	-		Psyr_4962	0.76	+1.3
5,885,318	+		Psyr_4962	0.79	+0.9
5,885,318	+		Psyr_4962	0.79	-0.7
5,885,318	+		Psyr_4962	0.79	-0.5
5,885,318	+		Psyr_4962	0.79	+0.3
5,885,319	-		Psyr_4962	0.79	+0.3
5,885,319	-		Psyr_4962	0.79	+0.7
5,885,319	-		Psyr_4962	0.79	+0.2
5,885,322	+		Psyr_4962	0.79	-0.3
5,885,322	+		Psyr_4962	0.79	-0.8
5,885,322	+		Psyr_4962	0.79	+0.8
5,885,322	+		Psyr_4962	0.79	+1.6
5,885,322	+		Psyr_4962	0.79	+1.2
5,885,322	+		Psyr_4962	0.79	-0.7
5,885,323	-		Psyr_4962	0.79	+0.5
5,885,323	-		Psyr_4962	0.79	+0.4
5,885,323	-		Psyr_4962	0.79	+1.3
5,885,776	-				+1.0
5,885,820	+				-0.6
5,885,867	+				-0.2
5,885,921	+				-0.5
5,886,057	+				-0.3
5,886,058	-				+0.5
5,886,058	-				-0.2
5,886,058	-				-0.1
5,886,058	-				+0.7
5,886,058	-				+1.3
5,886,750	+		Psyr_4963	0.63	-0.7
5,886,751	-		Psyr_4963	0.63	+0.1
5,886,751	-		Psyr_4963	0.63	-2.0
5,886,964	+		Psyr_4963	0.86	-0.7
5,886,964	+		Psyr_4963	0.86	+0.3
5,886,964	+		Psyr_4963	0.86	-0.8
5,886,964	+		Psyr_4963	0.86	-0.2
5,886,964	+		Psyr_4963	0.86	+0.9
5,886,964	+		Psyr_4963	0.86	+1.1
5,886,964	+		Psyr_4963	0.86	+0.2
5,886,965	-		Psyr_4963	0.86	-0.3
5,886,965	-		Psyr_4963	0.86	+0.0
5,886,965	-		Psyr_4963	0.86	-0.0
5,886,965	-		Psyr_4963	0.86	+0.7
5,886,972	-		Psyr_4963	0.87	+0.3
5,886,972	-		Psyr_4963	0.87	+1.8
5,886,972	-		Psyr_4963	0.87	+1.5
5,886,972	-		Psyr_4963	0.87	+0.5
5,887,043	-				+1.3
5,887,043	-				-2.2
5,887,104	+				-1.1
5,887,105	-				+1.3
5,887,105	-				+1.4
5,887,105	-				-0.4
5,887,128	+				+0.2
5,887,135	+				-0.3
5,887,136	-				+0.5