Experiment: Succinic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4802 and Psyr_4803 are separated by 24 nucleotides Psyr_4803 and Psyr_4804 are separated by 291 nucleotides Psyr_4804 and Psyr_4805 are separated by 112 nucleotides
Psyr_4802: Psyr_4802 - Secretion protein HlyD, at 5,691,982 to 5,693,256
_4802
Psyr_4803: Psyr_4803 - Heavy metal efflux pump CzcA, at 5,693,281 to 5,696,445
_4803
Psyr_4804: Psyr_4804 - conserved hypothetical protein, at 5,696,737 to 5,697,324
_4804
Psyr_4805: Psyr_4805 - YD repeat protein, at 5,697,437 to 5,701,126
_4805
Position (kb) 5693
5694
5695
5696
5697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5692.576 kb on + strand, within Psyr_4802 at 5692.576 kb on + strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5692.577 kb on - strand, within Psyr_4802 at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.272 kb on + strand at 5693.273 kb on - strand at 5693.372 kb on - strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.414 kb on + strand at 5693.415 kb on - strand at 5693.415 kb on - strand at 5693.896 kb on + strand, within Psyr_4803 at 5693.897 kb on - strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.962 kb on + strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.963 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.965 kb on - strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.966 kb on + strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.967 kb on - strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5693.987 kb on + strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803 at 5694.252 kb on - strand, within Psyr_4803 at 5694.269 kb on - strand, within Psyr_4803 at 5694.269 kb on - strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.007 kb on + strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.008 kb on - strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.165 kb on + strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.166 kb on - strand, within Psyr_4803 at 5695.270 kb on + strand, within Psyr_4803 at 5695.270 kb on + strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.271 kb on - strand, within Psyr_4803 at 5695.340 kb on + strand, within Psyr_4803 at 5695.387 kb on - strand, within Psyr_4803 at 5695.570 kb on + strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.571 kb on - strand, within Psyr_4803 at 5695.653 kb on + strand, within Psyr_4803 at 5695.653 kb on + strand, within Psyr_4803 at 5695.655 kb on + strand, within Psyr_4803 at 5695.655 kb on + strand, within Psyr_4803 at 5695.671 kb on + strand, within Psyr_4803 at 5695.671 kb on + strand, within Psyr_4803 at 5695.672 kb on - strand, within Psyr_4803 at 5695.672 kb on - strand, within Psyr_4803 at 5695.971 kb on - strand, within Psyr_4803 at 5696.312 kb on + strand at 5696.313 kb on - strand at 5696.392 kb on + strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.393 kb on - strand at 5696.444 kb on - strand at 5696.513 kb on - strand at 5696.562 kb on + strand at 5696.562 kb on + strand at 5696.563 kb on - strand at 5696.563 kb on - strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.633 kb on + strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.634 kb on - strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.635 kb on + strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.636 kb on - strand at 5696.698 kb on + strand at 5696.698 kb on + strand at 5696.699 kb on - strand at 5696.699 kb on - strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.708 kb on + strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.709 kb on - strand at 5696.737 kb on - strand at 5696.737 kb on - strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.751 kb on + strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.752 kb on - strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.755 kb on + strand at 5696.756 kb on - strand at 5696.756 kb on - strand at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.011 kb on + strand, within Psyr_4804 at 5697.012 kb on - strand, within Psyr_4804 at 5697.329 kb on + strand at 5697.329 kb on + strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.330 kb on - strand at 5697.410 kb on + strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand at 5697.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid (C) remove 5,692,576 + Psyr_4802 0.47 -0.3 5,692,576 + Psyr_4802 0.47 +0.1 5,692,577 - Psyr_4802 0.47 -0.4 5,692,577 - Psyr_4802 0.47 +0.6 5,692,577 - Psyr_4802 0.47 -0.8 5,692,577 - Psyr_4802 0.47 +1.8 5,693,272 + +1.9 5,693,272 + +0.7 5,693,272 + +0.6 5,693,273 - -0.2 5,693,372 - -0.6 5,693,414 + -1.3 5,693,414 + +1.4 5,693,414 + -1.0 5,693,414 + +0.1 5,693,414 + -0.2 5,693,414 + +0.6 5,693,415 - +0.3 5,693,415 - -1.4 5,693,896 + Psyr_4803 0.19 +0.6 5,693,897 - Psyr_4803 0.19 +2.6 5,693,962 + Psyr_4803 0.22 +0.7 5,693,962 + Psyr_4803 0.22 -0.6 5,693,962 + Psyr_4803 0.22 -0.7 5,693,962 + Psyr_4803 0.22 +1.1 5,693,963 - Psyr_4803 0.22 -0.1 5,693,963 - Psyr_4803 0.22 +0.3 5,693,963 - Psyr_4803 0.22 -0.1 5,693,963 - Psyr_4803 0.22 -0.2 5,693,963 - Psyr_4803 0.22 +0.8 5,693,965 - Psyr_4803 0.22 +0.2 5,693,965 - Psyr_4803 0.22 +0.5 5,693,966 + Psyr_4803 0.22 +0.3 5,693,966 + Psyr_4803 0.22 +3.3 5,693,966 + Psyr_4803 0.22 +0.9 5,693,966 + Psyr_4803 0.22 -1.5 5,693,966 + Psyr_4803 0.22 +1.0 5,693,966 + Psyr_4803 0.22 +2.5 5,693,966 + Psyr_4803 0.22 -1.0 5,693,966 + Psyr_4803 0.22 -0.2 5,693,966 + Psyr_4803 0.22 +1.3 5,693,966 + Psyr_4803 0.22 +0.4 5,693,966 + Psyr_4803 0.22 +1.3 5,693,966 + Psyr_4803 0.22 +0.9 5,693,966 + Psyr_4803 0.22 -0.9 5,693,966 + Psyr_4803 0.22 +0.2 5,693,966 + Psyr_4803 0.22 +0.7 5,693,967 - Psyr_4803 0.22 -1.1 5,693,967 - Psyr_4803 0.22 +1.1 5,693,967 - Psyr_4803 0.22 +2.2 5,693,967 - Psyr_4803 0.22 +0.6 5,693,967 - Psyr_4803 0.22 +1.1 5,693,967 - Psyr_4803 0.22 +0.3 5,693,967 - Psyr_4803 0.22 +1.2 5,693,967 - Psyr_4803 0.22 +0.7 5,693,967 - Psyr_4803 0.22 +0.9 5,693,967 - Psyr_4803 0.22 +0.0 5,693,967 - Psyr_4803 0.22 +0.3 5,693,967 - Psyr_4803 0.22 -0.5 5,693,967 - Psyr_4803 0.22 -0.7 5,693,967 - Psyr_4803 0.22 +0.1 5,693,987 + Psyr_4803 0.22 +2.6 5,693,987 + Psyr_4803 0.22 -1.8 5,694,252 - Psyr_4803 0.31 -0.5 5,694,252 - Psyr_4803 0.31 -0.2 5,694,269 - Psyr_4803 0.31 -0.1 5,694,269 - Psyr_4803 0.31 +0.7 5,695,007 + Psyr_4803 0.55 +0.3 5,695,007 + Psyr_4803 0.55 +0.3 5,695,007 + Psyr_4803 0.55 +1.6 5,695,007 + Psyr_4803 0.55 +1.0 5,695,007 + Psyr_4803 0.55 +0.9 5,695,008 - Psyr_4803 0.55 -0.7 5,695,008 - Psyr_4803 0.55 +1.8 5,695,008 - Psyr_4803 0.55 +0.1 5,695,008 - Psyr_4803 0.55 +1.5 5,695,165 + Psyr_4803 0.60 +0.3 5,695,165 + Psyr_4803 0.60 +0.9 5,695,165 + Psyr_4803 0.60 +1.5 5,695,165 + Psyr_4803 0.60 +0.6 5,695,166 - Psyr_4803 0.60 +0.1 5,695,166 - Psyr_4803 0.60 -0.7 5,695,166 - Psyr_4803 0.60 +0.0 5,695,166 - Psyr_4803 0.60 +0.3 5,695,166 - Psyr_4803 0.60 -0.2 5,695,166 - Psyr_4803 0.60 -0.8 5,695,166 - Psyr_4803 0.60 +1.5 5,695,166 - Psyr_4803 0.60 -0.9 5,695,166 - Psyr_4803 0.60 +0.9 5,695,166 - Psyr_4803 0.60 +1.1 5,695,166 - Psyr_4803 0.60 -1.3 5,695,166 - Psyr_4803 0.60 +1.3 5,695,270 + Psyr_4803 0.63 -0.4 5,695,270 + Psyr_4803 0.63 -0.3 5,695,271 - Psyr_4803 0.63 +0.1 5,695,271 - Psyr_4803 0.63 +0.3 5,695,271 - Psyr_4803 0.63 -0.4 5,695,340 + Psyr_4803 0.65 +1.1 5,695,387 - Psyr_4803 0.67 +0.1 5,695,570 + Psyr_4803 0.72 +0.9 5,695,571 - Psyr_4803 0.72 +1.4 5,695,571 - Psyr_4803 0.72 +0.6 5,695,571 - Psyr_4803 0.72 -0.4 5,695,653 + Psyr_4803 0.75 +0.3 5,695,653 + Psyr_4803 0.75 +1.2 5,695,655 + Psyr_4803 0.75 +1.0 5,695,655 + Psyr_4803 0.75 +0.3 5,695,671 + Psyr_4803 0.76 +0.5 5,695,671 + Psyr_4803 0.76 +0.2 5,695,672 - Psyr_4803 0.76 +0.8 5,695,672 - Psyr_4803 0.76 +0.3 5,695,971 - Psyr_4803 0.85 +0.0 5,696,312 + -0.9 5,696,313 - +0.3 5,696,392 + +1.0 5,696,393 - -1.0 5,696,393 - +0.8 5,696,393 - +1.3 5,696,444 - -1.0 5,696,513 - +0.9 5,696,562 + -1.0 5,696,562 + -0.2 5,696,563 - +1.3 5,696,563 - +0.3 5,696,633 + +1.3 5,696,633 + -0.7 5,696,633 + +0.9 5,696,633 + -0.9 5,696,634 - -1.3 5,696,634 - +0.0 5,696,634 - +1.3 5,696,635 + +0.2 5,696,635 + +1.3 5,696,635 + -1.2 5,696,635 + -0.3 5,696,635 + +1.0 5,696,635 + +0.0 5,696,635 + -0.2 5,696,635 + -0.9 5,696,635 + -0.7 5,696,635 + -0.3 5,696,635 + +0.3 5,696,635 + +0.4 5,696,635 + +0.6 5,696,635 + +1.9 5,696,635 + +1.6 5,696,635 + +0.7 5,696,635 + +0.1 5,696,636 - +0.3 5,696,636 - +1.3 5,696,636 - +0.7 5,696,636 - +2.3 5,696,636 - -0.1 5,696,636 - +0.9 5,696,636 - +0.3 5,696,636 - -0.1 5,696,698 + +0.6 5,696,698 + -0.4 5,696,699 - +2.1 5,696,699 - +0.4 5,696,708 + -1.2 5,696,708 + +0.9 5,696,708 + +0.9 5,696,708 + -3.5 5,696,708 + -1.1 5,696,708 + -0.4 5,696,708 + -1.0 5,696,708 + -0.5 5,696,708 + -0.0 5,696,708 + +0.9 5,696,709 - -0.4 5,696,709 - +0.0 5,696,709 - +0.5 5,696,709 - -0.4 5,696,709 - +0.0 5,696,709 - -0.0 5,696,709 - -1.3 5,696,709 - -0.1 5,696,709 - -1.3 5,696,709 - +0.9 5,696,709 - +0.1 5,696,709 - +1.5 5,696,709 - +0.6 5,696,709 - -0.1 5,696,709 - -0.9 5,696,709 - +0.3 5,696,709 - -0.4 5,696,709 - +0.3 5,696,709 - -1.3 5,696,737 - +1.0 5,696,737 - -0.7 5,696,751 + +0.4 5,696,751 + -0.3 5,696,751 + +0.0 5,696,752 - -1.9 5,696,752 - -0.1 5,696,752 - -0.7 5,696,752 - +0.1 5,696,752 - +0.1 5,696,752 - -0.0 5,696,755 + -0.9 5,696,755 + +0.0 5,696,755 + -0.3 5,696,756 - -0.4 5,696,756 - -0.3 5,697,011 + Psyr_4804 0.47 -0.4 5,697,011 + Psyr_4804 0.47 +1.5 5,697,011 + Psyr_4804 0.47 -1.3 5,697,012 - Psyr_4804 0.47 -0.4 5,697,329 + -0.7 5,697,329 + -0.0 5,697,330 - +3.3 5,697,330 - +0.3 5,697,330 - +0.9 5,697,330 - +0.2 5,697,410 + +0.3 5,697,411 - -0.3 5,697,411 - -0.3 5,697,411 - -0.9 5,697,411 - +0.7 5,697,411 - +0.0
Or see this region's nucleotide sequence