Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4186

Experiment: Succinic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4185 and Psyr_4186 are separated by 16 nucleotidesPsyr_4186 and Psyr_4187 are separated by 8 nucleotides Psyr_4185: Psyr_4185 - phosphoglucosamine mutase, at 4,977,760 to 4,979,103 _4185 Psyr_4186: Psyr_4186 - Dihydropteroate synthase, at 4,979,120 to 4,979,971 _4186 Psyr_4187: Psyr_4187 - membrane protease FtsH catalytic subunit, at 4,979,980 to 4,981,884 _4187 Position (kb) 4979 4980Strain fitness (log2 ratio) -2 -1 0 1at 4979.956 kb on - strandat 4979.982 kb on - strandat 4980.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid (C)
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4,979,956 - +0.1
4,979,982 - +1.6
4,980,042 + -2.5

Or see this region's nucleotide sequence