Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0888

Experiment: Succinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid (C)
1,009,141	+		Psyr_0886	0.61	+0.1
1,009,141	+		Psyr_0886	0.61	-0.2
1,009,142	-		Psyr_0886	0.61	+1.5
1,009,142	-		Psyr_0886	0.61	-0.9
1,009,142	-		Psyr_0886	0.61	-0.9
1,009,155	+		Psyr_0886	0.63	-0.6
1,009,429	+				-0.9
1,009,429	+		Psyr_0886	0.90	+1.1
1,009,430	-				+1.6
1,009,430	-				+0.4
1,009,516	+				+2.4
1,009,516	+				+1.3
1,009,516	+				+1.4
1,009,517	-				+1.3
1,009,517	-				+2.1
1,009,517	-				-0.5
1,009,598	+		Psyr_0887	0.13	+0.9
1,009,599	-		Psyr_0887	0.13	-1.2
1,009,599	-		Psyr_0887	0.13	+0.7
1,009,624	+		Psyr_0887	0.19	-2.9
1,009,624	+		Psyr_0887	0.19	-0.4
1,009,625	-		Psyr_0887	0.19	+0.5
1,009,644	+		Psyr_0887	0.23	-0.7
1,009,644	+		Psyr_0887	0.23	+2.9
1,009,644	+		Psyr_0887	0.23	+0.2
1,009,644	+		Psyr_0887	0.23	-1.1
1,009,644	+		Psyr_0887	0.23	+0.6
1,009,645	-		Psyr_0887	0.23	+1.6
1,009,645	-		Psyr_0887	0.23	+0.1
1,009,678	+		Psyr_0887	0.30	+0.6
1,009,678	+		Psyr_0887	0.30	+0.1
1,009,678	+		Psyr_0887	0.30	+0.4
1,009,678	+		Psyr_0887	0.30	-2.3
1,009,678	+		Psyr_0887	0.30	-0.5
1,009,678	+		Psyr_0887	0.30	-0.5
1,009,678	+		Psyr_0887	0.30	+0.6
1,009,679	-		Psyr_0887	0.30	-0.9
1,009,679	-		Psyr_0887	0.30	+0.1
1,009,679	-		Psyr_0887	0.30	-0.5
1,009,679	-		Psyr_0887	0.30	-0.5
1,009,825	+		Psyr_0887	0.60	+0.1
1,009,826	-		Psyr_0887	0.60	+0.6
1,009,826	-		Psyr_0887	0.60	-0.2
1,009,858	+		Psyr_0887	0.67	-0.2
1,009,858	+		Psyr_0887	0.67	+1.6
1,009,858	+		Psyr_0887	0.67	-0.4
1,009,858	+		Psyr_0887	0.67	+0.1
1,009,858	+		Psyr_0887	0.67	+0.3
1,009,858	+		Psyr_0887	0.67	+0.1
1,009,858	+		Psyr_0887	0.67	+0.9
1,009,858	+		Psyr_0887	0.67	-0.8
1,009,858	+		Psyr_0887	0.67	-0.9
1,009,858	+		Psyr_0887	0.67	-2.3
1,009,859	-		Psyr_0887	0.67	-0.5
1,009,859	-		Psyr_0887	0.67	+0.1
1,009,859	-		Psyr_0887	0.67	+2.1
1,009,927	+		Psyr_0887	0.81	+1.2
1,009,927	+		Psyr_0887	0.81	+0.3
1,009,927	+		Psyr_0887	0.81	+1.7
1,009,927	+		Psyr_0887	0.81	+0.7
1,009,927	+		Psyr_0887	0.81	-0.9
1,009,927	+		Psyr_0887	0.81	+0.4
1,009,927	+		Psyr_0887	0.81	+0.6
1,009,927	+		Psyr_0887	0.81	-0.1
1,009,927	+		Psyr_0887	0.81	+0.2
1,009,927	+		Psyr_0887	0.81	+0.1
1,009,927	+		Psyr_0887	0.81	+2.5
1,009,927	+		Psyr_0887	0.81	-0.7
1,009,927	+		Psyr_0887	0.81	-1.5
1,009,927	+		Psyr_0887	0.81	-0.1
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	-1.2
1,009,928	-		Psyr_0887	0.82	+0.8
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+1.1
1,009,928	-		Psyr_0887	0.82	+0.8
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+0.7
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+1.4
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+2.2
1,009,928	-		Psyr_0887	0.82	+0.3
1,009,928	-		Psyr_0887	0.82	-1.5
1,009,928	-		Psyr_0887	0.82	-0.6
1,009,928	-		Psyr_0887	0.82	-0.6
1,009,928	-		Psyr_0887	0.82	+1.0
1,011,370	+				-1.6
1,011,370	+				+0.2
1,011,370	+				-0.8
1,011,370	+				-0.8
1,011,370	+				+0.4
1,011,371	-				+1.3
1,011,371	-				+1.2
1,011,371	-				-1.1
1,011,400	+				-0.5
1,011,420	-				-1.4
1,011,432	-				-1.3
1,011,439	+				-0.5
1,011,439	+				+0.5
1,011,443	+				+0.7
1,011,446	+				-2.3
1,011,447	-				-0.9
1,011,447	-				-0.7
1,011,447	-				+0.1
1,011,483	+				+0.4
1,011,483	+				+0.3
1,011,483	+				-0.0
1,011,487	+				-0.0
1,011,487	+				+2.1
1,011,487	+				+0.9
1,011,487	+				-1.9
1,011,488	-				-1.9
1,011,488	-				+0.5
1,011,488	-				+1.1
1,011,488	-				+0.1
1,011,488	-				-2.5
1,011,488	-				-0.4
1,011,488	-				-1.8
1,011,488	-				-0.5
1,011,488	-				-1.4
1,011,488	-				+0.1
1,011,492	+				+0.6
1,011,492	+				-0.9
1,011,492	+				+2.2
1,011,492	+				+2.6
1,011,493	-				+0.8
1,011,493	-				+0.2
1,011,493	-				+1.1
1,011,493	-				-1.9
1,011,493	-				-0.8
1,011,498	+				-0.1
1,011,498	+				+1.8
1,011,498	+				+0.5
1,011,498	+				-0.8
1,011,498	+				-1.1
1,011,499	-				-0.7
1,011,546	+		Psyr_0889	0.11	+0.3
1,011,578	+		Psyr_0889	0.24	+1.1
1,011,578	+		Psyr_0889	0.24	-0.5
1,011,578	+		Psyr_0889	0.24	+0.9
1,011,612	+		Psyr_0889	0.37	+0.5
1,011,613	-		Psyr_0889	0.38	+2.1
1,011,613	-		Psyr_0889	0.38	-0.1
1,011,670	+		Psyr_0889	0.60	-0.5
1,011,882	+		Psyr_0890	0.33	+0.3
1,011,882	+		Psyr_0890	0.33	+0.3
1,011,882	+		Psyr_0890	0.33	+1.1
1,011,883	-		Psyr_0890	0.33	-0.7
1,011,883	-		Psyr_0890	0.33	+2.1
1,011,885	-		Psyr_0890	0.34	-2.3
1,011,885	-		Psyr_0890	0.34	+0.1
1,011,901	+		Psyr_0890	0.38	+0.6
1,011,901	+		Psyr_0890	0.38	+0.2
1,011,901	+		Psyr_0890	0.38	+0.3
1,011,901	+		Psyr_0890	0.38	+0.1
1,011,901	+		Psyr_0890	0.38	+1.4
1,011,901	+		Psyr_0890	0.38	+0.8
1,011,902	-		Psyr_0890	0.39	+2.4
1,011,905	+		Psyr_0890	0.39	+0.1
1,011,905	+		Psyr_0890	0.39	+1.1
1,011,905	+		Psyr_0890	0.39	+0.5
1,011,905	+		Psyr_0890	0.39	+0.6
1,011,905	+		Psyr_0890	0.39	-1.5
1,011,906	-		Psyr_0890	0.40	+1.1
1,011,906	-		Psyr_0890	0.40	-1.4
1,011,906	-		Psyr_0890	0.40	-2.5
1,011,906	-		Psyr_0890	0.40	+0.5
1,011,911	-		Psyr_0890	0.41	-2.5
1,011,911	-		Psyr_0890	0.41	-0.7
1,011,911	-		Psyr_0890	0.41	+0.1
1,011,965	-		Psyr_0890	0.57	-0.7
1,012,126	+				+0.6
1,012,126	+				-0.3
1,012,127	-				-0.3
1,012,328	+		Psyr_0891	0.25	+0.5
1,012,328	+		Psyr_0891	0.25	-0.7
1,012,328	+		Psyr_0891	0.25	+1.1
1,012,328	+		Psyr_0891	0.25	-1.5
1,012,328	+		Psyr_0891	0.25	+2.1
1,012,328	+		Psyr_0891	0.25	+0.4
1,012,328	+		Psyr_0891	0.25	+0.1
1,012,328	+		Psyr_0891	0.25	-0.6
1,012,328	+		Psyr_0891	0.25	+0.6
1,012,328	+		Psyr_0891	0.25	+1.0
1,012,328	+		Psyr_0891	0.25	+0.7
1,012,329	-		Psyr_0891	0.25	-0.8
1,012,329	-		Psyr_0891	0.25	+0.9
1,012,329	-		Psyr_0891	0.25	-0.6
1,012,335	+		Psyr_0891	0.26	-0.2
1,012,338	+		Psyr_0891	0.26	-1.3
1,012,338	+		Psyr_0891	0.26	-0.1
1,012,339	-		Psyr_0891	0.27	-0.3