Experiment: Succinic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0828 and Psyr_0829 are separated by 228 nucleotides Psyr_0829 and Psyr_0830 overlap by 8 nucleotides
Psyr_0828: Psyr_0828 - ketopantoate hydroxymethyltransferase, at 937,690 to 938,490
_0828
Psyr_0829: Psyr_0829 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, at 938,719 to 939,225
_0829
Psyr_0830: Psyr_0830 - Poly(A) polymerase, at 939,218 to 940,693
_0830
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 937.748 kb on + strand at 937.749 kb on - strand at 938.311 kb on - strand, within Psyr_0828 at 938.417 kb on + strand at 938.473 kb on - strand at 938.479 kb on + strand at 938.479 kb on + strand at 938.480 kb on - strand at 938.480 kb on - strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.633 kb on + strand at 938.634 kb on - strand at 938.634 kb on - strand at 938.673 kb on + strand at 938.673 kb on + strand at 938.673 kb on + strand at 938.674 kb on - strand at 938.693 kb on + strand at 939.192 kb on - strand at 939.271 kb on + strand at 939.468 kb on - strand, within Psyr_0830 at 939.468 kb on - strand, within Psyr_0830 at 939.468 kb on - strand, within Psyr_0830 at 939.468 kb on - strand, within Psyr_0830 at 939.644 kb on + strand, within Psyr_0830 at 939.758 kb on - strand, within Psyr_0830 at 940.025 kb on - strand, within Psyr_0830 at 940.025 kb on - strand, within Psyr_0830 at 940.025 kb on - strand, within Psyr_0830 at 940.027 kb on - strand, within Psyr_0830 at 940.123 kb on - strand, within Psyr_0830 at 940.126 kb on - strand, within Psyr_0830 at 940.126 kb on - strand, within Psyr_0830 at 940.180 kb on - strand, within Psyr_0830 at 940.181 kb on + strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830 at 940.182 kb on - strand, within Psyr_0830
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid (C) remove 937,748 + -0.3 937,749 - -1.3 938,311 - Psyr_0828 0.78 -1.2 938,417 + +1.1 938,473 - -0.3 938,479 + -0.9 938,479 + -1.1 938,480 - -0.5 938,480 - -1.5 938,492 + +1.1 938,492 + -0.9 938,492 + -3.2 938,492 + -0.9 938,492 + -0.9 938,492 + -1.9 938,492 + +0.1 938,492 + -2.9 938,492 + -1.9 938,492 + -2.4 938,492 + -0.5 938,492 + -2.5 938,492 + -2.5 938,493 - +2.4 938,493 - -0.1 938,493 - -2.5 938,493 - -0.5 938,493 - -0.1 938,493 - -1.7 938,493 - -1.9 938,493 - +0.1 938,493 - -1.1 938,493 - -1.5 938,493 - +0.9 938,493 - +0.3 938,493 - +0.2 938,633 + -1.6 938,634 - +0.1 938,634 - +1.0 938,673 + +2.1 938,673 + -0.8 938,673 + -0.6 938,674 - +2.4 938,693 + +0.6 939,192 - +0.1 939,271 + -1.5 939,468 - Psyr_0830 0.17 +1.7 939,468 - Psyr_0830 0.17 +1.7 939,468 - Psyr_0830 0.17 -0.1 939,468 - Psyr_0830 0.17 -0.6 939,644 + Psyr_0830 0.29 +3.7 939,758 - Psyr_0830 0.37 +0.1 940,025 - Psyr_0830 0.55 -0.5 940,025 - Psyr_0830 0.55 +0.1 940,025 - Psyr_0830 0.55 +2.1 940,027 - Psyr_0830 0.55 +2.7 940,123 - Psyr_0830 0.61 -1.6 940,126 - Psyr_0830 0.62 -2.1 940,126 - Psyr_0830 0.62 +0.1 940,180 - Psyr_0830 0.65 +2.2 940,181 + Psyr_0830 0.65 +0.1 940,182 - Psyr_0830 0.65 -1.9 940,182 - Psyr_0830 0.65 -1.7 940,182 - Psyr_0830 0.65 +0.1 940,182 - Psyr_0830 0.65 -1.8 940,182 - Psyr_0830 0.65 +0.3 940,182 - Psyr_0830 0.65 -1.9 940,182 - Psyr_0830 0.65 +0.3
Or see this region's nucleotide sequence