Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0641

Experiment: Succinic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0639 and Psyr_0640 are separated by 18 nucleotidesPsyr_0640 and Psyr_0641 are separated by 19 nucleotidesPsyr_0641 and Psyr_0642 overlap by 4 nucleotidesPsyr_0642 and Psyr_0643 are separated by 120 nucleotides Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603 _0639 Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260 _0640 Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029 _0641 Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331 _0642 Psyr_0643: Psyr_0643 - MaoC-like dehydratase, at 730,452 to 731,312 _0643 Position (kb) 729 730 731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 728.284 kb on + strand, within Psyr_0639at 728.284 kb on + strand, within Psyr_0639at 728.285 kb on - strand, within Psyr_0639at 728.591 kb on + strandat 728.636 kb on - strandat 728.789 kb on - strand, within Psyr_0640at 728.789 kb on - strand, within Psyr_0640at 728.845 kb on + strand, within Psyr_0640at 728.872 kb on + strand, within Psyr_0640at 728.873 kb on - strand, within Psyr_0640at 728.875 kb on + strand, within Psyr_0640at 728.884 kb on + strand, within Psyr_0640at 728.884 kb on + strand, within Psyr_0640at 728.885 kb on - strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.938 kb on + strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 728.939 kb on - strand, within Psyr_0640at 729.178 kb on + strand, within Psyr_0640at 729.178 kb on + strand, within Psyr_0640at 729.179 kb on - strand, within Psyr_0640at 729.182 kb on + strand, within Psyr_0640at 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.241 kb on - strandat 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.419 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.896 kb on - strand, within Psyr_0641at 729.943 kb on + strand, within Psyr_0641at 729.977 kb on + strandat 729.977 kb on + strandat 729.978 kb on - strandat 729.978 kb on - strandat 730.117 kb on + strand, within Psyr_0642at 730.117 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.207 kb on - strand, within Psyr_0642at 730.352 kb on + strandat 730.352 kb on + strandat 730.352 kb on + strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.750 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.762 kb on - strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid (C)
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728,284 + Psyr_0639 0.44 +1.4
728,284 + Psyr_0639 0.44 -3.8
728,285 - Psyr_0639 0.44 -0.3
728,591 + -0.3
728,636 - +0.3
728,789 - Psyr_0640 0.26 -0.7
728,789 - Psyr_0640 0.26 -1.3
728,845 + Psyr_0640 0.35 +0.7
728,872 + Psyr_0640 0.39 -0.3
728,873 - Psyr_0640 0.39 +0.5
728,875 + Psyr_0640 0.40 -0.3
728,884 + Psyr_0640 0.41 +0.4
728,884 + Psyr_0640 0.41 -0.1
728,885 - Psyr_0640 0.41 +0.8
728,938 + Psyr_0640 0.49 +1.1
728,938 + Psyr_0640 0.49 +0.2
728,938 + Psyr_0640 0.49 -0.4
728,939 - Psyr_0640 0.50 +0.2
728,939 - Psyr_0640 0.50 -0.9
728,939 - Psyr_0640 0.50 -1.7
729,178 + Psyr_0640 0.87 +0.7
729,178 + Psyr_0640 0.87 +0.7
729,179 - Psyr_0640 0.87 +1.2
729,182 + Psyr_0640 0.88 -0.8
729,240 + -1.3
729,240 + +0.0
729,240 + -0.7
729,240 + +4.2
729,241 - -1.8
729,407 + Psyr_0641 0.17 +0.5
729,407 + Psyr_0641 0.17 +1.2
729,407 + Psyr_0641 0.17 +0.2
729,407 + Psyr_0641 0.17 -1.7
729,407 + Psyr_0641 0.17 +0.4
729,407 + Psyr_0641 0.17 -0.3
729,407 + Psyr_0641 0.17 +0.4
729,407 + Psyr_0641 0.17 +2.0
729,407 + Psyr_0641 0.17 +0.2
729,407 + Psyr_0641 0.17 -0.6
729,407 + Psyr_0641 0.17 +1.0
729,407 + Psyr_0641 0.17 -1.1
729,407 + Psyr_0641 0.17 -0.8
729,408 - Psyr_0641 0.17 -0.4
729,408 - Psyr_0641 0.17 +0.3
729,408 - Psyr_0641 0.17 +0.6
729,408 - Psyr_0641 0.17 +0.3
729,408 - Psyr_0641 0.17 +0.7
729,408 - Psyr_0641 0.17 +0.8
729,408 - Psyr_0641 0.17 -0.7
729,419 - Psyr_0641 0.19 +1.3
729,597 - Psyr_0641 0.42 +0.3
729,597 - Psyr_0641 0.42 -0.3
729,707 + Psyr_0641 0.57 +2.2
729,707 + Psyr_0641 0.57 -1.0
729,707 + Psyr_0641 0.57 -0.6
729,707 + Psyr_0641 0.57 +0.3
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 -0.8
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 +0.7
729,707 + Psyr_0641 0.57 -0.8
729,707 + Psyr_0641 0.57 +0.7
729,707 + Psyr_0641 0.57 +0.7
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 +1.2
729,708 - Psyr_0641 0.57 +1.7
729,708 - Psyr_0641 0.57 -0.2
729,708 - Psyr_0641 0.57 -0.8
729,708 - Psyr_0641 0.57 +0.6
729,708 - Psyr_0641 0.57 +0.8
729,708 - Psyr_0641 0.57 +1.2
729,708 - Psyr_0641 0.57 +0.2
729,708 - Psyr_0641 0.57 -2.4
729,708 - Psyr_0641 0.57 +0.2
729,708 - Psyr_0641 0.57 -1.7
729,896 - Psyr_0641 0.82 +0.6
729,943 + Psyr_0641 0.88 +0.2
729,977 + +0.2
729,977 + +0.5
729,978 - -0.5
729,978 - +1.0
730,117 + Psyr_0642 0.30 +1.0
730,117 + Psyr_0642 0.30 +0.3
730,206 + Psyr_0642 0.59 -0.6
730,206 + Psyr_0642 0.59 +0.5
730,206 + Psyr_0642 0.59 -2.2
730,207 - Psyr_0642 0.59 -0.4
730,352 + -0.1
730,352 + +0.2
730,352 + -1.8
730,353 - +0.2
730,353 - +1.2
730,353 - +0.2
730,353 - +0.2
730,484 + +0.2
730,484 + +0.6
730,484 + +0.7
730,485 - +2.7
730,485 - +0.6
730,485 - +0.5
730,750 + Psyr_0643 0.35 +0.7
730,761 + Psyr_0643 0.36 +0.7
730,761 + Psyr_0643 0.36 +0.6
730,762 - Psyr_0643 0.36 -0.8
730,975 + Psyr_0643 0.61 +0.2
730,975 + Psyr_0643 0.61 -0.4
730,975 + Psyr_0643 0.61 +1.0
730,975 + Psyr_0643 0.61 +0.7
730,975 + Psyr_0643 0.61 +0.2
730,975 + Psyr_0643 0.61 +1.4
730,975 + Psyr_0643 0.61 +0.1
730,975 + Psyr_0643 0.61 -0.3
730,976 - Psyr_0643 0.61 +1.2
730,976 - Psyr_0643 0.61 +0.8
730,976 - Psyr_0643 0.61 +0.3
730,976 - Psyr_0643 0.61 -1.6
730,976 - Psyr_0643 0.61 -0.3
730,976 - Psyr_0643 0.61 +0.6
730,976 - Psyr_0643 0.61 +0.6
730,976 - Psyr_0643 0.61 +0.9
730,976 - Psyr_0643 0.61 +1.3
730,976 - Psyr_0643 0.61 +0.6
730,976 - Psyr_0643 0.61 +0.7

Or see this region's nucleotide sequence