Experiment: Succinic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0045 and Psyr_0046 overlap by 4 nucleotides Psyr_0046 and Psyr_0047 are separated by 44 nucleotides Psyr_0047 and Psyr_0048 are separated by 93 nucleotides Psyr_0048 and Psyr_0049 are separated by 211 nucleotides
Psyr_0045: Psyr_0045 - oligopeptidase A, Metallo peptidase, MEROPS family M03A, at 45,889 to 47,940
_0045
Psyr_0046: Psyr_0046 - conserved hypothetical protein, at 47,937 to 48,227
_0046
Psyr_0047: Psyr_0047 - hypothetical protein, at 48,272 to 48,574
_0047
Psyr_0048: Psyr_0048 - conserved hypothetical protein, at 48,668 to 48,898
_0048
Psyr_0049: Psyr_0049 - Cytochrome c, class I:Iron permease FTR1, at 49,110 to 51,008
_0049
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 46.960 kb on + strand, within Psyr_0045 at 46.960 kb on + strand, within Psyr_0045 at 46.960 kb on + strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 46.961 kb on - strand, within Psyr_0045 at 47.125 kb on + strand, within Psyr_0045 at 47.125 kb on + strand, within Psyr_0045 at 47.622 kb on + strand, within Psyr_0045 at 47.623 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.660 kb on - strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.719 kb on + strand, within Psyr_0045 at 47.720 kb on - strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.725 kb on + strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.726 kb on - strand, within Psyr_0045 at 47.945 kb on + strand at 47.953 kb on + strand at 47.953 kb on + strand at 48.099 kb on - strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.175 kb on + strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.176 kb on - strand, within Psyr_0046 at 48.226 kb on - strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.235 kb on + strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.236 kb on - strand at 48.240 kb on - strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.270 kb on + strand at 48.271 kb on - strand at 48.271 kb on - strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.273 kb on + strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.274 kb on - strand at 48.277 kb on + strand at 48.277 kb on + strand at 48.348 kb on + strand, within Psyr_0047 at 48.348 kb on + strand, within Psyr_0047 at 48.349 kb on - strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.368 kb on + strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.369 kb on - strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.447 kb on + strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.448 kb on - strand, within Psyr_0047 at 48.451 kb on + strand, within Psyr_0047 at 48.464 kb on + strand, within Psyr_0047 at 48.465 kb on - strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.468 kb on + strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.469 kb on - strand, within Psyr_0047 at 48.512 kb on + strand, within Psyr_0047 at 48.523 kb on + strand, within Psyr_0047 at 48.568 kb on + strand at 48.568 kb on + strand at 48.569 kb on - strand at 48.592 kb on - strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.635 kb on + strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.636 kb on - strand at 48.669 kb on + strand at 48.834 kb on - strand, within Psyr_0048 at 48.885 kb on + strand at 48.885 kb on + strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.886 kb on - strand at 48.959 kb on + strand at 48.959 kb on + strand at 48.959 kb on + strand at 48.960 kb on - strand at 48.960 kb on - strand at 48.960 kb on - strand at 49.026 kb on - strand at 49.029 kb on + strand at 49.045 kb on + strand at 49.046 kb on - strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.052 kb on + strand at 49.053 kb on - strand at 49.053 kb on - strand at 49.053 kb on - strand at 49.058 kb on + strand at 49.058 kb on + strand at 49.058 kb on + strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.059 kb on - strand at 49.159 kb on + strand at 49.159 kb on + strand at 49.159 kb on + strand at 49.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid (C) remove 46,960 + Psyr_0045 0.52 -1.8 46,960 + Psyr_0045 0.52 -0.9 46,960 + Psyr_0045 0.52 -0.2 46,961 - Psyr_0045 0.52 -0.3 46,961 - Psyr_0045 0.52 -1.7 46,961 - Psyr_0045 0.52 -0.0 46,961 - Psyr_0045 0.52 -0.6 47,125 + Psyr_0045 0.60 +0.2 47,125 + Psyr_0045 0.60 +0.7 47,622 + Psyr_0045 0.84 +0.1 47,623 - Psyr_0045 0.85 +0.1 47,660 - Psyr_0045 0.86 +0.4 47,660 - Psyr_0045 0.86 -1.6 47,660 - Psyr_0045 0.86 -1.8 47,660 - Psyr_0045 0.86 -0.4 47,719 + Psyr_0045 0.89 +0.3 47,719 + Psyr_0045 0.89 -0.6 47,719 + Psyr_0045 0.89 +1.1 47,720 - Psyr_0045 0.89 -1.2 47,725 + Psyr_0045 0.89 +0.5 47,725 + Psyr_0045 0.89 +1.4 47,725 + Psyr_0045 0.89 +0.4 47,725 + Psyr_0045 0.89 +0.7 47,725 + Psyr_0045 0.89 +1.2 47,725 + Psyr_0045 0.89 +0.4 47,725 + Psyr_0045 0.89 +0.5 47,726 - Psyr_0045 0.90 -0.8 47,726 - Psyr_0045 0.90 -1.2 47,726 - Psyr_0045 0.90 +0.7 47,945 + -0.9 47,953 + -1.0 47,953 + +2.2 48,099 - Psyr_0046 0.56 -1.2 48,175 + Psyr_0046 0.82 +0.4 48,175 + Psyr_0046 0.82 +3.2 48,175 + Psyr_0046 0.82 -0.6 48,175 + Psyr_0046 0.82 -1.1 48,176 - Psyr_0046 0.82 -0.4 48,176 - Psyr_0046 0.82 -0.3 48,176 - Psyr_0046 0.82 -1.4 48,176 - Psyr_0046 0.82 -2.9 48,226 - +0.4 48,235 + +0.6 48,235 + +0.8 48,235 + -0.6 48,235 + +1.1 48,236 - +1.9 48,236 - +1.9 48,236 - +0.4 48,236 - +0.7 48,236 - -1.2 48,236 - +0.8 48,240 - -0.3 48,270 + +0.7 48,270 + +0.0 48,270 + +0.8 48,270 + -1.4 48,271 - +0.2 48,271 - +0.2 48,273 + -0.3 48,273 + -1.5 48,273 + -0.0 48,273 + -1.2 48,273 + +0.4 48,273 + -0.9 48,273 + -3.2 48,274 - -0.3 48,274 - +0.9 48,274 - +0.1 48,277 + +2.4 48,277 + +0.5 48,348 + Psyr_0047 0.25 +0.8 48,348 + Psyr_0047 0.25 -0.2 48,349 - Psyr_0047 0.25 -0.6 48,368 + Psyr_0047 0.32 +0.2 48,368 + Psyr_0047 0.32 -0.1 48,368 + Psyr_0047 0.32 +1.4 48,369 - Psyr_0047 0.32 -1.5 48,369 - Psyr_0047 0.32 +0.2 48,447 + Psyr_0047 0.58 -0.2 48,447 + Psyr_0047 0.58 -1.4 48,447 + Psyr_0047 0.58 +1.7 48,448 - Psyr_0047 0.58 +1.8 48,448 - Psyr_0047 0.58 +1.1 48,448 - Psyr_0047 0.58 +0.7 48,448 - Psyr_0047 0.58 -1.9 48,448 - Psyr_0047 0.58 -0.5 48,448 - Psyr_0047 0.58 +0.6 48,448 - Psyr_0047 0.58 +1.6 48,451 + Psyr_0047 0.59 -0.3 48,464 + Psyr_0047 0.63 -0.7 48,465 - Psyr_0047 0.64 +1.6 48,468 + Psyr_0047 0.65 +1.9 48,468 + Psyr_0047 0.65 +1.3 48,468 + Psyr_0047 0.65 +2.0 48,468 + Psyr_0047 0.65 +0.4 48,468 + Psyr_0047 0.65 +0.4 48,469 - Psyr_0047 0.65 +1.4 48,469 - Psyr_0047 0.65 -0.4 48,469 - Psyr_0047 0.65 -0.8 48,469 - Psyr_0047 0.65 +0.8 48,512 + Psyr_0047 0.79 -3.7 48,523 + Psyr_0047 0.83 +0.0 48,568 + -0.9 48,568 + +0.4 48,569 - +0.1 48,592 - -0.4 48,635 + -0.6 48,635 + -3.1 48,635 + -2.8 48,636 - +1.9 48,636 - -1.6 48,636 - +1.2 48,636 - -0.6 48,669 + -0.7 48,834 - Psyr_0048 0.72 -0.6 48,885 + -0.2 48,885 + +0.0 48,886 - -0.6 48,886 - -0.7 48,886 - +0.5 48,886 - -1.2 48,886 - +0.4 48,886 - -0.0 48,959 + -0.8 48,959 + -0.4 48,959 + +2.2 48,960 - +0.4 48,960 - -0.1 48,960 - +0.9 49,026 - -1.2 49,029 + -0.2 49,045 + +1.0 49,046 - -1.0 49,052 + +0.1 49,052 + +0.6 49,052 + -0.7 49,052 + -0.8 49,053 - -0.6 49,053 - +0.9 49,053 - -2.6 49,058 + -0.3 49,058 + +0.2 49,058 + -0.1 49,059 - -0.5 49,059 - -0.8 49,059 - -1.4 49,059 - +1.0 49,159 + +0.2 49,159 + -1.0 49,159 + -1.2 49,208 - -0.4
Or see this region's nucleotide sequence