Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0026

Experiment: Succinic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Succinic Acid (C)
29,088	-		Psyr_0025	0.55	+1.4
29,088	-		Psyr_0025	0.55	+0.4
29,140	+		Psyr_0025	0.61	-2.2
29,269	-		Psyr_0025	0.77	-1.6
29,280	+		Psyr_0025	0.78	-0.4
29,280	+		Psyr_0025	0.78	-1.2
29,280	+		Psyr_0025	0.78	-2.2
29,280	+		Psyr_0025	0.78	-0.6
29,280	+		Psyr_0025	0.78	-2.8
29,281	-		Psyr_0025	0.78	-1.9
29,281	-		Psyr_0025	0.78	-2.2
29,466	-				+0.0
29,497	+				-1.2
29,497	+				+0.4
29,497	+				+0.1
29,497	+				+0.1
29,497	+				+0.4
29,498	-				+0.7
29,499	+				+0.6
29,499	+				+2.0
29,499	+				-0.2
29,499	+				-1.9
29,499	+				+1.6
29,499	+				+1.4
29,499	+				+0.1
29,499	+				+0.4
29,499	+				-0.6
29,499	+				+0.3
29,499	+				+0.4
29,499	+				+0.4
29,499	+				+0.1
29,499	+				+0.3
29,499	+				+0.6
29,499	+				+0.4
29,499	+				+1.1
29,500	-				+1.0
29,500	-				-1.3
29,500	-				-0.9
29,500	-				+0.4
29,500	-				+0.7
29,500	-				+1.5
29,500	-				-1.4
29,500	-				-1.0
29,500	-				+0.2
29,500	-				+0.4
29,500	-				-0.8
29,500	-				-0.2
29,500	-				-1.2
29,503	+				+1.6
29,503	+				-0.3
29,503	+				+0.0
29,503	+				-0.7
29,503	+				+2.0
29,503	+				-1.6
29,503	+				-0.9
29,503	+				+0.4
29,503	+				+0.6
29,503	+				+0.4
29,503	+				+0.1
29,503	+				+0.2
29,503	+				+0.1
29,503	+				+0.6
29,503	+				+0.5
29,503	+				-0.5
29,503	+				+0.4
29,503	+				+1.0
29,503	+				+0.1
29,503	+				+1.4
29,503	+				+0.9
29,503	+				-1.7
29,504	-				-0.2
29,504	-				+0.7
29,504	-				+0.5
29,504	-				+0.3
29,504	-				+2.0
29,504	-				-1.9
29,504	-				+0.7
29,504	-				-0.1
29,504	-				-0.0
29,504	-				+1.2
29,504	-				+0.4
29,504	-				+0.8
29,504	-				-0.4
29,610	+				-0.6
29,610	+				+0.5
29,610	+				-0.2
29,611	-				+0.6
29,611	-				-0.4
29,611	-				-0.1
29,638	+				-0.7
29,638	+				+1.5
29,638	+				+1.4
29,638	+				-0.8
29,639	-				-0.6
29,639	-				+1.3
29,639	-				-0.6
29,639	-				-1.4
29,639	-				-1.8
29,792	+				-0.6
29,792	+				-0.7
29,845	-		Psyr_0026	0.13	-0.1
29,868	-		Psyr_0026	0.14	-1.0
29,868	-		Psyr_0026	0.14	+3.2
29,966	+		Psyr_0026	0.21	+0.4
29,967	-		Psyr_0026	0.21	-2.8
29,986	+		Psyr_0026	0.22	-0.9
29,986	+		Psyr_0026	0.22	+0.1
29,986	+		Psyr_0026	0.22	+0.2
29,987	-		Psyr_0026	0.22	+0.3
29,996	+		Psyr_0026	0.22	-0.6
29,996	+		Psyr_0026	0.22	-0.4
29,997	-		Psyr_0026	0.22	+0.7
29,997	-		Psyr_0026	0.22	-0.0
30,248	+		Psyr_0026	0.38	-0.2
30,248	+		Psyr_0026	0.38	+0.5
30,248	+		Psyr_0026	0.38	+1.6
30,905	+		Psyr_0026	0.80	-1.4
30,905	+		Psyr_0026	0.80	+0.4
30,905	+		Psyr_0026	0.80	-1.2
30,905	+		Psyr_0026	0.80	-0.9
30,905	+		Psyr_0026	0.80	+0.8
30,905	+		Psyr_0026	0.80	+0.8
30,905	+		Psyr_0026	0.80	-0.5
30,905	+		Psyr_0026	0.80	-0.6
30,905	+		Psyr_0026	0.80	+0.2
30,906	-		Psyr_0026	0.80	+0.2
30,906	-		Psyr_0026	0.80	-0.3
30,906	-		Psyr_0026	0.80	+0.4
30,906	-		Psyr_0026	0.80	-1.5
30,906	-		Psyr_0026	0.80	+2.1
30,906	-		Psyr_0026	0.80	-1.2
30,906	-		Psyr_0026	0.80	+0.4
30,906	-		Psyr_0026	0.80	-1.8
30,906	-		Psyr_0026	0.80	-0.5
30,906	-		Psyr_0026	0.80	+0.2
30,906	-		Psyr_0026	0.80	-1.2
30,906	-		Psyr_0026	0.80	-1.4
30,906	-		Psyr_0026	0.80	+0.4
30,947	+		Psyr_0026	0.83	-0.0
30,947	+		Psyr_0026	0.83	-0.6
30,947	+		Psyr_0026	0.83	+0.1
30,947	+		Psyr_0026	0.83	+0.6
30,948	-		Psyr_0026	0.83	+2.0
30,948	-		Psyr_0026	0.83	+0.4
30,961	+		Psyr_0026	0.84	-1.6
30,962	-		Psyr_0026	0.84	-1.9
30,962	-		Psyr_0026	0.84	+0.3
30,963	+		Psyr_0026	0.84	+0.4
30,963	+		Psyr_0026	0.84	-1.2
30,963	+		Psyr_0026	0.84	-0.1
30,963	+		Psyr_0026	0.84	+0.6
30,963	+		Psyr_0026	0.84	+0.2
30,963	+		Psyr_0026	0.84	-0.6
30,964	-		Psyr_0026	0.84	-0.2
31,041	-		Psyr_0026	0.89	+0.1
31,041	-		Psyr_0026	0.89	+0.3
31,041	-		Psyr_0026	0.89	+0.6
31,041	-		Psyr_0026	0.89	+0.4
31,041	-		Psyr_0026	0.89	+0.9
31,049	+		Psyr_0026	0.90	-0.5
31,079	+				+0.2
31,079	+				+0.2
31,080	-				-0.3
31,080	-				+0.8
31,285	+				+1.6
31,285	+				-0.5
31,285	+				+1.4
31,286	-				+0.6
31,286	-				+0.9
31,286	-				-0.2
31,286	-				+3.6
31,322	+		Psyr_0027	0.12	-1.5
31,322	+		Psyr_0027	0.12	+0.2
31,323	-		Psyr_0027	0.12	-0.2
31,323	-		Psyr_0027	0.12	-0.5
31,323	-		Psyr_0027	0.12	+0.4
31,358	+		Psyr_0027	0.23	-1.4
31,359	-		Psyr_0027	0.24	-0.6
31,359	-		Psyr_0027	0.24	+0.4
31,359	-		Psyr_0027	0.24	-1.6
31,359	-		Psyr_0027	0.24	+2.0
31,359	-		Psyr_0027	0.24	+0.7
31,363	+		Psyr_0027	0.25	+0.2
31,363	+		Psyr_0027	0.25	-0.9
31,363	+		Psyr_0027	0.25	-0.1
31,363	+		Psyr_0027	0.25	-0.2
31,363	+		Psyr_0027	0.25	+0.6
31,363	+		Psyr_0027	0.25	-0.6
31,363	+		Psyr_0027	0.25	+1.1
31,363	+		Psyr_0027	0.25	-0.5
31,363	+		Psyr_0027	0.25	-1.5
31,363	+		Psyr_0027	0.25	+1.7
31,364	-		Psyr_0027	0.25	-0.6
31,364	-		Psyr_0027	0.25	+1.4
31,364	-		Psyr_0027	0.25	+2.4
31,364	-		Psyr_0027	0.25	-0.8
31,364	-		Psyr_0027	0.25	+0.8
31,364	-		Psyr_0027	0.25	-0.3
31,364	-		Psyr_0027	0.25	+0.7
31,364	-		Psyr_0027	0.25	-2.5
31,364	-		Psyr_0027	0.25	-1.0
31,411	+		Psyr_0027	0.40	+0.1
31,411	+		Psyr_0027	0.40	-0.6
31,411	+		Psyr_0027	0.40	+1.3
31,412	-		Psyr_0027	0.40	-0.9
31,412	-		Psyr_0027	0.40	-0.2
31,412	-		Psyr_0027	0.40	-0.3
31,412	-		Psyr_0027	0.40	+2.0
31,454	+		Psyr_0027	0.53	+0.4
31,455	-		Psyr_0027	0.54	+0.7
31,455	-		Psyr_0027	0.54	+0.3
31,584	+				+0.8
31,584	+				+0.2
31,584	+				+0.3
31,585	-				-0.2
31,585	-				+2.1
31,585	-				+0.5
31,586	+				-0.1
31,586	+				-0.4
31,586	+				-2.3
31,586	+				-0.2
31,586	+				+1.0
31,586	+				+0.4
31,586	+				-0.5
31,586	+				+1.7
31,586	+				-2.2
31,586	+				+0.7
31,586	+				-0.9
31,586	+				+1.4
31,586	+				+1.7
31,586	+				-0.3
31,586	+				+0.0
31,586	+				-0.5
31,587	-				+1.3
31,587	-				+2.5
31,587	-				+0.4
31,587	-				+0.6
31,587	-				+0.8
31,587	-				+1.0
31,587	-				+0.0
31,587	-				+2.4
31,587	-				+0.4
31,587	-				+1.4
31,587	-				+0.7
31,587	-				-0.4
31,587	-				+2.3
31,587	-				+2.4
31,587	-				-0.3
31,587	-				-0.6
31,587	-				-0.6
31,587	-				+0.6
31,587	-				-0.5
31,587	-				+0.6
31,587	-				+0.4
31,587	-				-0.2
31,587	-				-0.9
31,617	+				-0.3
31,642	-				-0.6
31,676	+				+0.3
31,676	+				+0.8
31,676	+				+0.0
31,677	-				+0.9
31,705	+				+0.3
31,705	+				-0.9
31,705	+				+0.9
31,706	-				+0.6
31,706	-				+1.1
31,706	-				+1.3
31,706	-				-0.5
31,752	+				+0.5
31,752	+				-0.2
31,752	+				+1.1
31,752	+				+0.4
31,752	+				+0.3
31,753	-				+0.1
31,753	-				-0.4
31,753	-				+0.2
31,753	-				+1.0
31,753	-				+1.4
31,753	-				-0.6
31,753	-				-0.6
31,753	-				-0.7
31,753	-				+0.8
31,756	+				+2.7
31,757	-				-0.8
31,769	+				-1.1
31,770	-				-1.6
31,992	-		Psyr_0028	0.24	-0.9
31,992	-		Psyr_0028	0.24	+0.2
32,011	-		Psyr_0028	0.26	+0.4
32,011	-		Psyr_0028	0.26	+0.6
32,036	+		Psyr_0028	0.29	-2.2
32,037	-		Psyr_0028	0.29	+0.7
32,037	-		Psyr_0028	0.29	+1.3
32,037	-		Psyr_0028	0.29	+0.9
32,057	+		Psyr_0028	0.31	-0.1
32,057	+		Psyr_0028	0.31	-0.2
32,057	+		Psyr_0028	0.31	+0.2
32,058	-		Psyr_0028	0.31	-0.0
32,058	-		Psyr_0028	0.31	+1.4
32,058	-		Psyr_0028	0.31	+0.3