Strain Fitness in Dechlorosoma suillum PS around Dsui_1413

Experiment: ALP with 3 all (C)s

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1411 and Dsui_1412 overlap by 8 nucleotidesDsui_1412 and Dsui_1413 overlap by 4 nucleotidesDsui_1413 and Dsui_1414 are separated by 153 nucleotides Dsui_1411: Dsui_1411 - histidinol dehydrogenase, at 1,468,088 to 1,469,395 _1411 Dsui_1412: Dsui_1412 - chromate transport protein ChrA, at 1,469,388 to 1,469,987 _1412 Dsui_1413: Dsui_1413 - chromate transport protein ChrA, at 1,469,984 to 1,470,505 _1413 Dsui_1414: Dsui_1414 - histidinol-phosphate aminotransferase, at 1,470,659 to 1,471,846 _1414 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -2 -1 0 1at 1469.541 kb on + strand, within Dsui_1412at 1469.669 kb on + strand, within Dsui_1412at 1469.834 kb on - strand, within Dsui_1412at 1469.874 kb on - strand, within Dsui_1412at 1469.902 kb on + strand, within Dsui_1412at 1470.047 kb on + strand, within Dsui_1413at 1470.075 kb on + strand, within Dsui_1413at 1470.167 kb on + strand, within Dsui_1413at 1470.183 kb on + strand, within Dsui_1413at 1470.499 kb on + strandat 1470.507 kb on - strandat 1470.608 kb on - strandat 1470.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with 3 all (C)s
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1,469,541 + Dsui_1412 0.26 -0.3
1,469,669 + Dsui_1412 0.47 -0.2
1,469,834 - Dsui_1412 0.74 +0.0
1,469,874 - Dsui_1412 0.81 -0.4
1,469,902 + Dsui_1412 0.86 -1.0
1,470,047 + Dsui_1413 0.12 +0.2
1,470,075 + Dsui_1413 0.17 -0.4
1,470,167 + Dsui_1413 0.35 -0.3
1,470,183 + Dsui_1413 0.38 -0.9
1,470,499 + +0.7
1,470,507 - -2.0
1,470,608 - +0.2
1,470,631 + +0.0

Or see this region's nucleotide sequence