Strain Fitness in Dechlorosoma suillum PS around Dsui_0951

Experiment: ALP with 3 all (C)s

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0948 and Dsui_0949 are separated by 40 nucleotidesDsui_0949 and Dsui_0950 overlap by 4 nucleotidesDsui_0950 and Dsui_0951 are separated by 169 nucleotidesDsui_0951 and Dsui_0952 are separated by 126 nucleotidesDsui_0952 and Dsui_0953 are separated by 94 nucleotides Dsui_0948: Dsui_0948 - hypothetical protein, at 975,431 to 975,850 _0948 Dsui_0949: Dsui_0949 - hypothetical protein, at 975,891 to 976,106 _0949 Dsui_0950: Dsui_0950 - acyl dehydratase, at 976,103 to 976,603 _0950 Dsui_0951: Dsui_0951 - nucleoside-diphosphate-sugar epimerase, at 976,773 to 977,732 _0951 Dsui_0952: Dsui_0952 - chemotaxis protein, at 977,859 to 978,482 _0952 Dsui_0953: Dsui_0953 - ADP-ribosyl-(dinitrogen reductase) hydrolase, at 978,577 to 979,500 _0953 Position (kb) 976 977 978Strain fitness (log2 ratio) -2 -1 0 1 2at 975.918 kb on - strand, within Dsui_0949at 976.147 kb on + strandat 976.398 kb on + strand, within Dsui_0950at 976.530 kb on - strand, within Dsui_0950at 976.642 kb on - strandat 976.700 kb on + strandat 976.700 kb on + strandat 976.893 kb on + strand, within Dsui_0951at 976.893 kb on + strand, within Dsui_0951at 977.020 kb on - strand, within Dsui_0951at 977.048 kb on + strand, within Dsui_0951at 977.399 kb on - strand, within Dsui_0951at 977.430 kb on + strand, within Dsui_0951at 977.432 kb on - strand, within Dsui_0951at 977.568 kb on - strand, within Dsui_0951at 977.590 kb on + strand, within Dsui_0951at 977.590 kb on + strand, within Dsui_0951at 977.598 kb on - strand, within Dsui_0951at 977.632 kb on - strand, within Dsui_0951at 977.666 kb on + strandat 977.666 kb on + strandat 977.672 kb on + strandat 977.676 kb on + strandat 977.684 kb on - strandat 977.695 kb on + strandat 977.752 kb on + strandat 977.850 kb on - strandat 977.865 kb on - strandat 977.889 kb on - strandat 977.942 kb on - strand, within Dsui_0952at 977.962 kb on + strand, within Dsui_0952at 978.105 kb on + strand, within Dsui_0952at 978.143 kb on + strandat 978.143 kb on + strand, within Dsui_0952at 978.151 kb on - strand, within Dsui_0952at 978.156 kb on - strand, within Dsui_0952at 978.165 kb on + strand, within Dsui_0952at 978.172 kb on - strand, within Dsui_0952at 978.316 kb on + strandat 978.316 kb on + strandat 978.316 kb on + strand, within Dsui_0952at 978.349 kb on - strand, within Dsui_0952at 978.419 kb on + strand, within Dsui_0952at 978.419 kb on + strandat 978.427 kb on - strandat 978.463 kb on - strandat 978.499 kb on - strandat 978.728 kb on - strand, within Dsui_0953

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with 3 all (C)s
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975,918 - Dsui_0949 0.12 +2.1
976,147 + +1.7
976,398 + Dsui_0950 0.59 +0.2
976,530 - Dsui_0950 0.85 -1.0
976,642 - +0.5
976,700 + +0.1
976,700 + -0.2
976,893 + Dsui_0951 0.12 +0.1
976,893 + Dsui_0951 0.12 +0.1
977,020 - Dsui_0951 0.26 +0.8
977,048 + Dsui_0951 0.29 +0.2
977,399 - Dsui_0951 0.65 +0.1
977,430 + Dsui_0951 0.68 +0.7
977,432 - Dsui_0951 0.69 +0.8
977,568 - Dsui_0951 0.83 -0.5
977,590 + Dsui_0951 0.85 -0.0
977,590 + Dsui_0951 0.85 -0.8
977,598 - Dsui_0951 0.86 -0.1
977,632 - Dsui_0951 0.89 +1.1
977,666 + -0.8
977,666 + +0.8
977,672 + +0.7
977,676 + -1.5
977,684 - +0.1
977,695 + +0.0
977,752 + +0.1
977,850 - +0.4
977,865 - +0.7
977,889 - +0.1
977,942 - Dsui_0952 0.13 +0.0
977,962 + Dsui_0952 0.17 -0.5
978,105 + Dsui_0952 0.39 +0.1
978,143 + -2.2
978,143 + Dsui_0952 0.46 -0.0
978,151 - Dsui_0952 0.47 +0.8
978,156 - Dsui_0952 0.48 +0.6
978,165 + Dsui_0952 0.49 -0.8
978,172 - Dsui_0952 0.50 +0.4
978,316 + +0.1
978,316 + +0.4
978,316 + Dsui_0952 0.73 -0.4
978,349 - Dsui_0952 0.79 -0.9
978,419 + Dsui_0952 0.90 -0.5
978,419 + +0.1
978,427 - +1.7
978,463 - +0.1
978,499 - +0.1
978,728 - Dsui_0953 0.16 +0.0

Or see this region's nucleotide sequence