Experiment: ALP with 3 all (C)s
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0254 and Dsui_0255 are separated by 133 nucleotides Dsui_0255 and Dsui_0256 are separated by 192 nucleotides Dsui_0256 and Dsui_0257 are separated by 46 nucleotides
Dsui_0254: Dsui_0254 - tyrosyl-tRNA synthetase, at 251,813 to 253,087
_0254
Dsui_0255: Dsui_0255 - hypothetical protein, at 253,221 to 254,048
_0255
Dsui_0256: Dsui_0256 - glutathione peroxidase, at 254,241 to 254,810
_0256
Dsui_0257: Dsui_0257 - hypothetical protein, at 254,857 to 255,660
_0257
Position (kb) 253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 253.218 kb on + strand at 253.265 kb on - strand at 253.338 kb on - strand, within Dsui_0255 at 253.416 kb on + strand at 253.560 kb on - strand, within Dsui_0255 at 253.564 kb on - strand, within Dsui_0255 at 253.601 kb on - strand, within Dsui_0255 at 253.959 kb on - strand, within Dsui_0255 at 254.056 kb on - strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.084 kb on + strand at 254.090 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.092 kb on - strand at 254.138 kb on - strand at 254.155 kb on - strand at 254.218 kb on + strand at 254.222 kb on + strand at 254.417 kb on + strand, within Dsui_0256 at 254.425 kb on - strand, within Dsui_0256 at 254.490 kb on + strand, within Dsui_0256 at 254.498 kb on - strand, within Dsui_0256 at 254.607 kb on - strand, within Dsui_0256 at 254.609 kb on + strand, within Dsui_0256 at 254.644 kb on + strand, within Dsui_0256 at 254.655 kb on + strand, within Dsui_0256 at 254.666 kb on + strand, within Dsui_0256 at 254.669 kb on - strand, within Dsui_0256 at 254.822 kb on + strand at 254.893 kb on + strand at 255.020 kb on - strand, within Dsui_0257 at 255.047 kb on - strand, within Dsui_0257
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with 3 all (C)s remove 253,218 + +0.0 253,265 - -1.0 253,338 - Dsui_0255 0.14 +0.0 253,416 + +0.0 253,560 - Dsui_0255 0.41 -1.0 253,564 - Dsui_0255 0.41 +0.0 253,601 - Dsui_0255 0.46 +0.0 253,959 - Dsui_0255 0.89 +0.0 254,056 - +0.4 254,084 + -0.0 254,084 + +1.0 254,084 + -1.0 254,084 + -0.0 254,084 + -0.0 254,084 + -0.0 254,084 + -0.0 254,084 + -1.0 254,084 + -0.0 254,084 + -0.0 254,084 + -0.0 254,084 + -0.0 254,084 + +1.0 254,084 + -0.0 254,090 - -1.3 254,092 - -0.6 254,092 - -0.5 254,092 - -0.7 254,092 - -0.6 254,092 - +0.3 254,092 - -0.0 254,092 - +0.3 254,092 - -1.3 254,092 - +0.7 254,092 - -0.6 254,092 - -0.2 254,138 - -1.6 254,155 - -0.5 254,218 + +1.2 254,222 + -0.0 254,417 + Dsui_0256 0.31 -0.3 254,425 - Dsui_0256 0.32 -2.0 254,490 + Dsui_0256 0.44 +0.7 254,498 - Dsui_0256 0.45 +1.4 254,607 - Dsui_0256 0.64 +0.3 254,609 + Dsui_0256 0.65 -0.7 254,644 + Dsui_0256 0.71 -0.6 254,655 + Dsui_0256 0.73 +3.2 254,666 + Dsui_0256 0.75 -0.9 254,669 - Dsui_0256 0.75 -0.0 254,822 + -0.0 254,893 + -0.6 255,020 - Dsui_0257 0.20 -0.0 255,047 - Dsui_0257 0.24 -0.0
Or see this region's nucleotide sequence