Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01116

Experiment: PYE 4C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C
1,219,535	+				+0.5
1,219,543	-				+0.6
1,219,543	-				-0.9
1,219,554	+				-0.7
1,219,562	-				-0.2
1,219,596	+				-2.7
1,219,599	-				+5.4
1,219,601	-				-0.7
1,219,602	+				+2.4
1,219,610	-				-2.5
1,219,659	-		CCNA_01115	0.14	-3.3
1,219,692	-		CCNA_01115	0.18	-2.2
1,219,694	+		CCNA_01115	0.19	+0.7
1,219,715	-		CCNA_01115	0.21	+1.3
1,219,751	-		CCNA_01115	0.26	-0.7
1,219,751	-		CCNA_01115	0.26	-1.2
1,219,775	-		CCNA_01115	0.29	-0.5
1,219,812	-		CCNA_01115	0.33	+1.4
1,219,833	+		CCNA_01115	0.36	+0.5
1,219,834	-		CCNA_01115	0.36	-1.0
1,219,856	-		CCNA_01115	0.39	-3.0
1,219,861	-		CCNA_01115	0.40	-1.6
1,219,862	+		CCNA_01115	0.40	-1.8
1,219,862	+		CCNA_01115	0.40	-2.9
1,219,870	-		CCNA_01115	0.41	-1.0
1,219,870	-		CCNA_01115	0.41	+1.0
1,219,890	+		CCNA_01115	0.43	-1.1
1,219,890	+		CCNA_01115	0.43	+0.7
1,220,002	-		CCNA_01115	0.57	-2.3
1,220,033	-		CCNA_01115	0.61	+2.9
1,220,060	-		CCNA_01115	0.65	-2.7
1,220,061	+		CCNA_01115	0.65	+0.4
1,220,061	+		CCNA_01115	0.65	-2.0
1,220,092	-		CCNA_01115	0.69	-0.3
1,220,102	-		CCNA_01115	0.70	+2.1
1,220,113	+		CCNA_01115	0.71	-0.5
1,220,113	+		CCNA_01115	0.71	+1.5
1,220,123	+		CCNA_01115	0.73	-1.6
1,220,123	+		CCNA_01115	0.73	-1.6
1,220,130	+		CCNA_01115	0.74	-1.5
1,220,130	+		CCNA_01115	0.74	+1.1
1,220,131	-		CCNA_01115	0.74	+1.8
1,220,138	-		CCNA_01115	0.75	+0.5
1,220,138	-		CCNA_01115	0.75	-0.7
1,220,177	+		CCNA_01115	0.80	+1.1
1,220,177	+		CCNA_01115	0.80	+0.7
1,220,177	+		CCNA_01115	0.80	-1.5
1,220,177	+		CCNA_01115	0.80	-0.5
1,220,185	-		CCNA_01115	0.81	-2.5
1,220,185	-		CCNA_01115	0.81	-0.7
1,220,185	-		CCNA_01115	0.81	-0.5
1,220,185	-		CCNA_01115	0.81	-1.8
1,220,194	-		CCNA_01115	0.82	-1.8
1,220,194	-		CCNA_01115	0.82	+0.4
1,220,194	-		CCNA_01115	0.82	+2.1
1,220,212	+		CCNA_01115	0.84	+0.7
1,220,215	+		CCNA_01115	0.84	-1.6
1,220,252	-		CCNA_01115	0.89	-2.4
1,220,266	-				-0.9
1,220,298	+				-1.5
1,220,303	+				-0.9
1,220,303	+				-2.1
1,220,311	-				-0.1
1,220,311	-				+1.7
1,220,311	-				-1.9
1,220,315	+				+0.1
1,220,334	+				-0.5
1,220,342	-				-0.2
1,220,350	+				-2.5
1,220,352	+				+1.3
1,220,352	+				-2.6
1,220,387	+				-0.9
1,220,457	+				+0.5
1,220,457	+				+0.0
1,220,463	+				+2.1
1,220,465	-				+1.9
1,220,467	-				+0.4
1,220,467	-				-0.7
1,220,480	+				+0.5
1,220,480	+				+0.8
1,220,488	-				-2.8
1,220,496	+				-0.3
1,220,497	+				-0.3
1,220,569	-				-1.0
1,220,569	-				+1.3
1,220,569	-				+0.5
1,220,606	+				-0.3
1,220,655	+				-3.1
1,220,655	+				-1.6
1,220,660	+				-2.6
1,220,660	+				-0.5
1,220,672	+				-0.3
1,220,811	+		CCNA_01116	0.16	+1.5
1,220,828	+		CCNA_01116	0.17	+0.0
1,220,890	-		CCNA_01116	0.20	+2.1
1,220,913	+		CCNA_01116	0.22	+2.1
1,220,924	+		CCNA_01116	0.22	-2.3
1,221,020	+		CCNA_01116	0.28	+0.9
1,221,031	+		CCNA_01116	0.28	+1.1
1,221,031	+		CCNA_01116	0.28	+0.3
1,221,173	+		CCNA_01116	0.36	-2.8
1,221,173	+		CCNA_01116	0.36	+0.1
1,221,195	+		CCNA_01116	0.38	-1.0
1,221,214	+		CCNA_01116	0.39	-2.0
1,221,219	+		CCNA_01116	0.39	+1.1
1,221,316	+		CCNA_01116	0.44	-0.2
1,221,328	+		CCNA_01116	0.45	-1.6
1,221,392	+		CCNA_01116	0.49	-2.3
1,221,410	+		CCNA_01116	0.50	-1.6
1,221,412	+		CCNA_01116	0.50	-0.8
1,221,468	+		CCNA_01116	0.53	+0.1
1,221,491	+		CCNA_01116	0.54	-0.6
1,221,525	+		CCNA_01116	0.56	-2.2
1,221,598	-		CCNA_01116	0.60	+2.1
1,221,647	+		CCNA_01116	0.63	-3.2
1,221,647	+		CCNA_01116	0.63	-2.8
1,221,655	-		CCNA_01116	0.64	+2.1
1,221,655	-		CCNA_01116	0.64	+0.1
1,221,655	-		CCNA_01116	0.64	+0.5
1,221,657	+		CCNA_01116	0.64	-1.2
1,221,668	+		CCNA_01116	0.64	-2.7
1,221,674	+		CCNA_01116	0.65	-1.6
1,221,674	+		CCNA_01116	0.65	-1.5
1,221,681	+		CCNA_01116	0.65	+1.1
1,221,761	+				+0.1
1,221,761	+		CCNA_01116	0.70	-2.3
1,221,775	+		CCNA_01116	0.71	-1.1
1,221,849	+		CCNA_01116	0.75	-3.9
1,221,849	+		CCNA_01116	0.75	-3.1
1,221,885	-		CCNA_01116	0.77	-0.2
1,221,899	+		CCNA_01116	0.78	-1.4
1,221,917	+		CCNA_01116	0.79	+0.2
1,221,970	+		CCNA_01116	0.82	-2.7
1,221,970	+		CCNA_01116	0.82	-1.3
1,221,970	+		CCNA_01116	0.82	-4.0
1,221,987	+		CCNA_01116	0.83	-0.9
1,222,000	+		CCNA_01116	0.83	-3.1
1,222,045	+		CCNA_01116	0.86	-0.6
1,222,053	-		CCNA_01116	0.86	-1.2
1,222,139	+				+0.3
1,222,242	-				-0.8
1,222,276	+				-0.2
1,222,276	+				+1.1
1,222,284	-				-0.3
1,222,284	-				-2.0
1,222,286	+				+0.3
1,222,286	+				+1.2
1,222,304	-				+0.0
1,222,348	+				+0.7
1,222,375	-				+0.7
1,222,417	-		CCNA_01117	0.13	+0.4
1,222,424	+		CCNA_01117	0.13	-2.5
1,222,443	-		CCNA_01117	0.15	-0.5
1,222,469	+		CCNA_01117	0.18	-0.3
1,222,475	+		CCNA_01117	0.19	+1.3
1,222,496	+		CCNA_01117	0.21	-0.3
1,222,496	+		CCNA_01117	0.21	-0.5
1,222,505	+		CCNA_01117	0.22	+0.9
1,222,546	-		CCNA_01117	0.27	+0.0
1,222,546	-		CCNA_01117	0.27	+1.3
1,222,546	-		CCNA_01117	0.27	+0.8
1,222,551	-		CCNA_01117	0.28	-0.1
1,222,553	+		CCNA_01117	0.28	+2.5
1,222,642	+		CCNA_01117	0.38	+0.5
1,222,649	+		CCNA_01117	0.39	-1.7
1,222,650	-		CCNA_01117	0.39	+0.8
1,222,650	-		CCNA_01117	0.39	+1.1
1,222,668	+		CCNA_01117	0.41	-0.1
1,222,668	+		CCNA_01117	0.41	+1.8
1,222,687	+		CCNA_01117	0.43	+0.4
1,222,687	+		CCNA_01117	0.43	-0.0
1,222,695	-		CCNA_01117	0.44	-1.2
1,222,695	-		CCNA_01117	0.44	+1.2
1,222,695	-		CCNA_01117	0.44	+0.4
1,222,695	-		CCNA_01117	0.44	+0.4
1,222,695	-		CCNA_01117	0.44	+0.9
1,222,695	-		CCNA_01117	0.44	+0.4
1,222,695	-		CCNA_01117	0.44	-2.4
1,222,706	+		CCNA_01117	0.45	-0.7
1,222,726	+		CCNA_01117	0.47	-1.3
1,222,758	+		CCNA_01117	0.51	-2.7
1,222,770	+		CCNA_01117	0.52	-0.6
1,222,818	+		CCNA_01117	0.58	-1.3
1,222,826	-		CCNA_01117	0.58	-0.1
1,222,840	-		CCNA_01117	0.60	+1.3
1,222,859	-		CCNA_01117	0.62	+1.2
1,222,878	+		CCNA_01117	0.64	+0.9
1,222,937	-		CCNA_01117	0.71	-0.5
1,222,952	-		CCNA_01117	0.73	-1.9
1,222,976	-		CCNA_01117	0.75	+0.4
1,223,014	+		CCNA_01117	0.80	-0.8
1,223,129	-				+0.7
1,223,170	+				+0.8
1,223,192	+				-3.6
1,223,192	+				+0.9
1,223,198	-				-0.2
1,223,200	-				-1.9
1,223,228	+				+0.1
1,223,228	+				+0.8
1,223,284	-				+1.1