Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01068

Experiment: PYE 4C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C
1,171,862	+		CCNA_01067	0.45	-2.8
1,171,862	+		CCNA_01067	0.45	-3.4
1,171,862	+		CCNA_01067	0.45	-2.8
1,171,862	+		CCNA_01067	0.45	-2.2
1,172,004	+		CCNA_01067	0.54	-0.4
1,172,008	+		CCNA_01067	0.54	-2.6
1,172,079	+		CCNA_01067	0.59	-1.5
1,172,096	+		CCNA_01067	0.60	+0.6
1,172,185	+		CCNA_01067	0.65	-2.0
1,172,190	+		CCNA_01067	0.66	-1.6
1,172,190	+		CCNA_01067	0.66	-1.3
1,172,190	+		CCNA_01067	0.66	-0.9
1,172,248	+		CCNA_01067	0.69	-0.8
1,172,248	+		CCNA_01067	0.69	+2.2
1,172,284	+		CCNA_01067	0.71	-2.2
1,172,284	+		CCNA_01067	0.71	-4.5
1,172,406	+		CCNA_01067	0.79	+1.2
1,172,429	+		CCNA_01067	0.81	-1.6
1,172,437	+		CCNA_01067	0.81	-3.9
1,172,492	+		CCNA_01067	0.85	-2.3
1,172,502	+		CCNA_01067	0.85	-3.6
1,172,502	+		CCNA_01067	0.85	-1.7
1,172,529	+		CCNA_01067	0.87	-1.5
1,172,591	+				-3.4
1,172,597	+				-1.6
1,172,638	+				-1.4
1,172,638	+				-3.9
1,172,646	-				-3.6
1,172,711	+				-0.1
1,172,711	+				+0.7
1,172,719	-				-1.3
1,172,719	-				-0.2
1,172,720	-				-1.2
1,172,739	-				+1.7
1,172,770	+				-0.2
1,172,770	+				+0.9
1,172,770	+				+1.1
1,172,778	-				-0.1
1,172,794	+				-0.4
1,172,815	+				+0.0
1,172,839	+				+0.5
1,172,839	+				-0.2
1,172,845	-				+0.9
1,172,847	-				+2.4
1,172,897	+				-2.0
1,172,907	+				-2.6
1,172,925	+				-0.5
1,172,932	+				-1.0
1,172,972	+		CCNA_01068	0.10	+0.5
1,172,985	+		CCNA_01068	0.11	-2.2
1,172,990	+		CCNA_01068	0.12	-1.8
1,172,990	+		CCNA_01068	0.12	-1.4
1,172,990	+		CCNA_01068	0.12	-3.4
1,172,990	+		CCNA_01068	0.12	-4.0
1,172,990	+		CCNA_01068	0.12	-1.8
1,172,990	+		CCNA_01068	0.12	-2.9
1,172,998	-		CCNA_01068	0.12	-2.7
1,172,998	-		CCNA_01068	0.12	-1.9
1,172,998	-		CCNA_01068	0.12	-0.7
1,172,998	-		CCNA_01068	0.12	-1.3
1,173,009	-		CCNA_01068	0.13	-0.9
1,173,034	-		CCNA_01068	0.15	-1.2
1,173,046	-		CCNA_01068	0.16	-2.7
1,173,090	+		CCNA_01068	0.19	-2.5
1,173,127	-		CCNA_01068	0.22	-0.4
1,173,153	-		CCNA_01068	0.24	-3.6
1,173,166	+		CCNA_01068	0.25	-0.7
1,173,167	+		CCNA_01068	0.25	-3.6
1,173,177	+		CCNA_01068	0.26	-1.7
1,173,180	-		CCNA_01068	0.26	-1.2
1,173,184	+		CCNA_01068	0.27	-1.4
1,173,184	-		CCNA_01068	0.27	-1.7
1,173,186	-		CCNA_01068	0.27	-1.3
1,173,212	-		CCNA_01068	0.29	-2.3
1,173,214	-		CCNA_01068	0.29	-2.8
1,173,217	+		CCNA_01068	0.29	-0.8
1,173,217	+		CCNA_01068	0.29	-2.0
1,173,217	+		CCNA_01068	0.29	+0.3
1,173,217	+		CCNA_01068	0.29	-2.1
1,173,222	+		CCNA_01068	0.30	-1.9
1,173,222	+		CCNA_01068	0.30	-1.4
1,173,225	-		CCNA_01068	0.30	-2.2
1,173,225	-		CCNA_01068	0.30	-1.4
1,173,230	-		CCNA_01068	0.30	-3.5
1,173,230	-		CCNA_01068	0.30	-0.3
1,173,230	-		CCNA_01068	0.30	-2.0
1,173,283	-		CCNA_01068	0.34	-1.0
1,173,297	+		CCNA_01068	0.35	+1.3
1,173,298	-		CCNA_01068	0.35	+0.9
1,173,304	+		CCNA_01068	0.36	-0.6
1,173,304	+		CCNA_01068	0.36	-1.4
1,173,304	+		CCNA_01068	0.36	-1.8
1,173,304	+		CCNA_01068	0.36	-4.8
1,173,312	-		CCNA_01068	0.37	-2.2
1,173,312	-		CCNA_01068	0.37	-2.1
1,173,338	+		CCNA_01068	0.39	-0.8
1,173,362	-		CCNA_01068	0.40	+0.5
1,173,379	-		CCNA_01068	0.42	-2.0
1,173,394	-		CCNA_01068	0.43	-2.2
1,173,408	-		CCNA_01068	0.44	-2.2
1,173,415	+		CCNA_01068	0.44	-1.3
1,173,415	+		CCNA_01068	0.44	-0.7
1,173,423	-		CCNA_01068	0.45	-2.2
1,173,433	-		CCNA_01068	0.46	-1.3
1,173,441	-		CCNA_01068	0.47	-1.2
1,173,464	+		CCNA_01068	0.48	-1.3
1,173,497	+		CCNA_01068	0.51	-2.3
1,173,505	-		CCNA_01068	0.51	-2.4
1,173,505	-		CCNA_01068	0.51	-3.6
1,173,505	-		CCNA_01068	0.51	-2.9
1,173,505	-		CCNA_01068	0.51	-1.2
1,173,523	+		CCNA_01068	0.53	-1.7
1,173,530	+		CCNA_01068	0.53	+0.1
1,173,530	+		CCNA_01068	0.53	-1.9
1,173,530	+		CCNA_01068	0.53	-0.8
1,173,530	+		CCNA_01068	0.53	+0.2
1,173,530	+		CCNA_01068	0.53	-0.7
1,173,538	-		CCNA_01068	0.54	-0.3
1,173,538	-		CCNA_01068	0.54	-3.5
1,173,583	-		CCNA_01068	0.58	-3.7
1,173,584	-		CCNA_01068	0.58	-2.3
1,173,585	+		CCNA_01068	0.58	-3.6
1,173,586	+		CCNA_01068	0.58	-3.6
1,173,586	+		CCNA_01068	0.58	-1.6
1,173,593	-		CCNA_01068	0.58	-1.5
1,173,594	-		CCNA_01068	0.58	-0.8
1,173,594	-		CCNA_01068	0.58	-3.6
1,173,594	-		CCNA_01068	0.58	-2.9
1,173,594	-		CCNA_01068	0.58	-3.8
1,173,594	-		CCNA_01068	0.58	-1.8
1,173,646	+		CCNA_01068	0.62	-0.2
1,173,677	+		CCNA_01068	0.65	-0.9
1,173,727	-		CCNA_01068	0.69	-1.3
1,173,727	-		CCNA_01068	0.69	-0.2
1,173,775	+		CCNA_01068	0.72	-2.9
1,173,775	+		CCNA_01068	0.72	-1.7
1,173,783	-		CCNA_01068	0.73	-1.4
1,173,788	-		CCNA_01068	0.73	-2.8
1,173,819	-		CCNA_01068	0.76	-3.4
1,173,821	+		CCNA_01068	0.76	-3.5
1,173,821	+				-1.3
1,173,821	+		CCNA_01068	0.76	-2.5
1,173,829	-		CCNA_01068	0.77	-2.5
1,173,829	-		CCNA_01068	0.77	-1.4
1,173,836	+		CCNA_01068	0.77	+1.5
1,173,836	+		CCNA_01068	0.77	-2.7
1,173,836	+		CCNA_01068	0.77	+0.0
1,173,837	-		CCNA_01068	0.77	-4.7
1,173,844	-		CCNA_01068	0.78	-1.1
1,173,844	-		CCNA_01068	0.78	-1.4
1,173,844	-		CCNA_01068	0.78	-1.8
1,173,844	-		CCNA_01068	0.78	-2.5
1,173,851	+		CCNA_01068	0.78	-0.4
1,173,859	-		CCNA_01068	0.79	-3.5
1,173,872	+		CCNA_01068	0.80	-3.3
1,173,880	+		CCNA_01068	0.81	-2.1
1,173,880	+		CCNA_01068	0.81	-3.3
1,173,891	+		CCNA_01068	0.81	-1.7
1,173,912	+		CCNA_01068	0.83	-1.7
1,173,930	-		CCNA_01068	0.84	-0.2
1,173,997	+		CCNA_01068	0.90	-1.5
1,173,997	+		CCNA_01068	0.90	-0.4
1,174,015	+				-1.3
1,174,021	+				-2.5
1,174,021	+				-4.5
1,174,023	-				-3.7
1,174,023	-				+0.5
1,174,029	-				-2.4
1,174,029	-				-3.1
1,174,029	-				-0.1
1,174,043	-				-3.4
1,174,082	+				-2.0
1,174,095	-				-1.4
1,174,118	+				-1.3
1,174,118	+				-0.9
1,174,118	+				-0.6
1,174,118	+				-3.4
1,174,118	+				-3.0
1,174,144	-				-0.9
1,174,173	+				+5.0
1,174,192	+				-0.8
1,174,202	+				+0.5
1,174,210	-				-1.3
1,174,261	+				+0.2
1,174,276	+				+0.9
1,174,293	+				+0.6
1,174,301	-				+2.2
1,174,357	-				-2.0
1,174,379	+				+0.4
1,174,437	-				-3.5
1,174,437	-				+0.6
1,174,467	+		CCNA_01069	0.12	+2.3
1,174,472	+		CCNA_01069	0.12	-0.2
1,174,538	-		CCNA_01069	0.17	+2.2
1,174,562	+		CCNA_01069	0.18	+1.5
1,174,562	+		CCNA_01069	0.18	+0.1
1,174,564	-		CCNA_01069	0.18	-0.4
1,174,570	-		CCNA_01069	0.19	-2.3
1,174,570	-		CCNA_01069	0.19	+0.1
1,174,708	-		CCNA_01069	0.28	-2.0
1,174,715	+		CCNA_01069	0.28	+1.4
1,174,715	+		CCNA_01069	0.28	+0.9
1,174,716	+		CCNA_01069	0.28	+1.2
1,174,745	-		CCNA_01069	0.30	-1.6
1,174,745	-		CCNA_01069	0.30	+0.6
1,174,793	+		CCNA_01069	0.33	-0.4
1,174,801	-		CCNA_01069	0.34	-1.9
1,174,815	+		CCNA_01069	0.35	-1.0
1,174,839	+		CCNA_01069	0.36	+1.4
1,174,847	-		CCNA_01069	0.37	-0.1
1,174,847	-		CCNA_01069	0.37	+2.2
1,174,847	-		CCNA_01069	0.37	+0.4
1,174,859	+		CCNA_01069	0.37	+1.1
1,174,877	+		CCNA_01069	0.39	+0.4
1,174,878	+		CCNA_01069	0.39	+0.0
1,174,913	-		CCNA_01069	0.41	+0.7
1,174,920	-		CCNA_01069	0.41	+1.6
1,174,922	+		CCNA_01069	0.42	+1.9
1,174,927	+		CCNA_01069	0.42	+1.0
1,174,930	-		CCNA_01069	0.42	+1.2
1,174,983	+		CCNA_01069	0.46	+2.1
1,174,998	+		CCNA_01069	0.46	+0.8
1,175,032	-		CCNA_01069	0.49	-0.8
1,175,077	-		CCNA_01069	0.52	-1.8
1,175,077	-		CCNA_01069	0.52	+0.2
1,175,083	-		CCNA_01069	0.52	-0.2