Experiment: PYE 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides CCNA_00583 and CCNA_00585 are separated by 118 nucleotides
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 610.864 kb on + strand, within CCNA_03886 at 610.871 kb on - strand, within CCNA_03886 at 610.872 kb on - strand at 610.879 kb on - strand, within CCNA_03886 at 610.882 kb on + strand, within CCNA_03886 at 610.905 kb on + strand at 610.909 kb on + strand at 610.913 kb on - strand at 610.913 kb on - strand at 610.928 kb on + strand at 610.934 kb on + strand at 610.937 kb on - strand at 610.966 kb on - strand at 611.051 kb on - strand at 611.063 kb on - strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.226 kb on + strand at 611.229 kb on + strand at 611.244 kb on + strand at 611.248 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.307 kb on - strand, within CCNA_00582 at 611.324 kb on - strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.326 kb on + strand, within CCNA_00582 at 611.333 kb on + strand, within CCNA_00582 at 611.422 kb on + strand, within CCNA_00582 at 611.440 kb on - strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.471 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.501 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.586 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.698 kb on + strand, within CCNA_00582 at 611.706 kb on - strand at 611.717 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.798 kb on + strand at 611.806 kb on - strand at 611.812 kb on + strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.820 kb on - strand at 611.830 kb on + strand at 611.889 kb on - strand at 611.896 kb on - strand at 611.903 kb on + strand at 611.973 kb on + strand at 611.973 kb on + strand at 612.027 kb on - strand, within CCNA_00583 at 612.042 kb on - strand, within CCNA_00583 at 612.047 kb on - strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.065 kb on - strand, within CCNA_00583 at 612.078 kb on - strand, within CCNA_00583 at 612.088 kb on - strand, within CCNA_00583 at 612.090 kb on + strand, within CCNA_00583 at 612.092 kb on + strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.098 kb on - strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.134 kb on + strand, within CCNA_00583 at 612.136 kb on - strand, within CCNA_00583 at 612.147 kb on - strand, within CCNA_00583 at 612.195 kb on + strand, within CCNA_00583 at 612.203 kb on - strand, within CCNA_00583 at 612.212 kb on + strand, within CCNA_00583 at 612.222 kb on + strand, within CCNA_00583 at 612.343 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.371 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.404 kb on - strand, within CCNA_00583 at 612.411 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.433 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.461 kb on + strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.464 kb on - strand, within CCNA_00583 at 612.469 kb on - strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.484 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.569 kb on + strand, within CCNA_00583 at 612.595 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.621 kb on - strand at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.657 kb on - strand, within CCNA_00583 at 612.677 kb on - strand, within CCNA_00583 at 612.724 kb on - strand, within CCNA_00583 at 612.756 kb on + strand, within CCNA_00583 at 612.762 kb on + strand, within CCNA_00583 at 612.829 kb on - strand, within CCNA_00583 at 612.830 kb on + strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.866 kb on - strand, within CCNA_00583 at 612.888 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.046 kb on - strand, within CCNA_00583 at 613.094 kb on - strand at 613.094 kb on - strand at 613.110 kb on - strand at 613.111 kb on - strand at 613.147 kb on + strand at 613.394 kb on + strand at 613.394 kb on + strand at 613.420 kb on + strand at 613.425 kb on + strand at 613.436 kb on + strand, within CCNA_00585 at 613.439 kb on - strand, within CCNA_00585 at 613.455 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.486 kb on - strand, within CCNA_00585 at 613.488 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.489 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.512 kb on + strand, within CCNA_00585 at 613.520 kb on - strand, within CCNA_00585 at 613.521 kb on - strand, within CCNA_00585 at 613.590 kb on + strand, within CCNA_00585 at 613.601 kb on + strand, within CCNA_00585 at 613.639 kb on + strand, within CCNA_00585 at 613.639 kb on - strand, within CCNA_00585 at 613.728 kb on - strand, within CCNA_00585 at 613.737 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.880 kb on - strand, within CCNA_00585 at 613.902 kb on - strand, within CCNA_00585 at 613.926 kb on + strand, within CCNA_00585 at 613.966 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 613.971 kb on + strand, within CCNA_00585 at 614.029 kb on - strand, within CCNA_00585 at 614.049 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.051 kb on + strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.091 kb on + strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.095 kb on + strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.104 kb on - strand, within CCNA_00585 at 614.113 kb on - strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.129 kb on + strand, within CCNA_00585 at 614.130 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 4C remove 610,864 + CCNA_03886 0.89 +0.4 610,871 - CCNA_03886 0.89 -0.4 610,872 - -1.0 610,879 - CCNA_03886 0.89 -2.4 610,882 + CCNA_03886 0.90 -1.3 610,905 + -0.1 610,909 + -1.6 610,913 - +3.6 610,913 - -2.6 610,928 + -1.3 610,934 + +1.9 610,937 - -3.4 610,966 - -1.0 611,051 - -1.2 611,063 - -0.6 611,144 + -3.0 611,152 - -2.5 611,152 - -1.5 611,214 + +0.3 611,214 + -0.0 611,214 + -1.4 611,226 + -2.6 611,229 + -0.9 611,244 + -2.8 611,248 - -0.5 611,284 + CCNA_00582 0.15 -2.5 611,284 + CCNA_00582 0.15 +0.2 611,292 - CCNA_00582 0.16 +0.5 611,292 - CCNA_00582 0.16 +0.3 611,307 - CCNA_00582 0.19 -2.6 611,324 - CCNA_00582 0.22 -0.5 611,326 + CCNA_00582 0.23 -1.0 611,326 + CCNA_00582 0.23 -3.0 611,333 + CCNA_00582 0.24 -1.4 611,422 + CCNA_00582 0.40 -0.1 611,440 - CCNA_00582 0.43 -1.3 611,457 + CCNA_00582 0.46 -2.4 611,457 + CCNA_00582 0.46 +0.9 611,465 - CCNA_00582 0.47 -1.6 611,470 + CCNA_00582 0.48 +0.9 611,471 - CCNA_00582 0.49 -1.3 611,478 - CCNA_00582 0.50 +0.7 611,478 - CCNA_00582 0.50 -0.5 611,483 + CCNA_00582 0.51 -1.2 611,483 + CCNA_00582 0.51 -1.3 611,483 + CCNA_00582 0.51 -0.8 611,501 + CCNA_00582 0.54 +0.7 611,501 + CCNA_00582 0.54 -3.9 611,501 + CCNA_00582 0.54 +3.4 611,509 - CCNA_00582 0.55 +0.3 611,509 - CCNA_00582 0.55 +0.9 611,581 + CCNA_00582 0.68 -0.3 611,586 + CCNA_00582 0.69 -1.0 611,586 + CCNA_00582 0.69 -0.8 611,589 - CCNA_00582 0.70 -2.4 611,589 - CCNA_00582 0.70 -1.7 611,589 - CCNA_00582 0.70 -3.4 611,698 + CCNA_00582 0.89 -1.1 611,706 - -2.1 611,717 - +1.9 611,779 + -2.0 611,779 + -1.6 611,779 + -2.0 611,779 + +0.4 611,779 + -0.3 611,779 + -0.1 611,779 + +0.1 611,779 + -2.5 611,779 + -0.1 611,779 + -1.6 611,779 + +0.3 611,779 + -1.7 611,779 + -1.3 611,779 + +0.2 611,779 + -1.0 611,779 + -0.7 611,779 + -0.8 611,779 + -1.0 611,779 + -0.8 611,779 + -2.0 611,779 + +2.9 611,779 + -0.6 611,779 + -0.7 611,779 + -0.9 611,779 + -4.0 611,779 + -1.8 611,779 + -1.3 611,779 + -1.0 611,779 + -0.6 611,787 - -3.2 611,787 - +0.9 611,787 - -2.0 611,787 - +0.3 611,787 - +1.9 611,787 - +1.3 611,787 - +3.9 611,787 - +0.3 611,787 - -1.2 611,787 - -2.4 611,787 - -3.7 611,787 - +0.9 611,787 - -3.0 611,787 - -3.5 611,787 - +1.9 611,787 - +0.9 611,787 - +0.3 611,787 - -2.1 611,787 - -0.3 611,787 - +0.1 611,787 - -1.0 611,787 - -3.8 611,787 - -1.0 611,787 - +2.9 611,787 - +0.5 611,787 - -1.1 611,798 + +0.1 611,806 - -2.7 611,812 + -0.1 611,820 - -2.3 611,820 - -3.8 611,820 - -1.1 611,830 + -0.1 611,889 - -2.0 611,896 - +0.9 611,903 + -2.2 611,973 + +0.6 611,973 + -1.4 612,027 - CCNA_00583 0.14 -4.2 612,042 - CCNA_00583 0.15 -2.1 612,047 - CCNA_00583 0.15 -1.3 612,057 + CCNA_00583 0.16 -3.2 612,057 + CCNA_00583 0.16 +1.0 612,065 - CCNA_00583 0.17 +1.2 612,078 - CCNA_00583 0.18 -1.1 612,088 - CCNA_00583 0.18 +0.3 612,090 + CCNA_00583 0.18 -1.6 612,092 + CCNA_00583 0.19 -1.1 612,098 - CCNA_00583 0.19 +0.5 612,098 - CCNA_00583 0.19 -3.0 612,113 + CCNA_00583 0.20 -1.1 612,113 + CCNA_00583 0.20 +1.9 612,134 + CCNA_00583 0.22 -0.4 612,136 - CCNA_00583 0.22 -2.8 612,147 - CCNA_00583 0.23 -0.5 612,195 + CCNA_00583 0.26 -2.8 612,203 - CCNA_00583 0.27 -1.7 612,212 + CCNA_00583 0.27 -2.7 612,222 + CCNA_00583 0.28 +0.5 612,343 + CCNA_00583 0.37 -0.5 612,364 + CCNA_00583 0.38 -0.9 612,371 - CCNA_00583 0.39 -1.3 612,372 - CCNA_00583 0.39 +3.2 612,372 - CCNA_00583 0.39 -0.9 612,372 - CCNA_00583 0.39 -1.1 612,372 - CCNA_00583 0.39 -1.7 612,404 - CCNA_00583 0.41 -0.3 612,411 + CCNA_00583 0.42 -1.4 612,419 - CCNA_00583 0.42 +1.3 612,420 - CCNA_00583 0.43 -2.1 612,433 + CCNA_00583 0.43 -1.9 612,433 + CCNA_00583 0.43 -1.3 612,456 + CCNA_00583 0.45 -0.8 612,456 + CCNA_00583 0.45 +0.7 612,461 + CCNA_00583 0.46 -3.5 612,464 - CCNA_00583 0.46 +1.9 612,464 - CCNA_00583 0.46 +1.4 612,469 - CCNA_00583 0.46 -2.1 612,484 + CCNA_00583 0.47 -0.4 612,484 + CCNA_00583 0.47 -2.3 612,569 + CCNA_00583 0.53 +1.4 612,569 + CCNA_00583 0.53 +1.6 612,595 + CCNA_00583 0.55 -1.7 612,618 + CCNA_00583 0.57 -1.0 612,621 - CCNA_00583 0.57 -1.1 612,621 - CCNA_00583 0.57 -2.0 612,621 - -0.9 612,621 - CCNA_00583 0.57 -0.7 612,626 - CCNA_00583 0.58 +1.9 612,626 - CCNA_00583 0.58 -0.2 612,657 - CCNA_00583 0.60 -0.5 612,677 - CCNA_00583 0.61 -0.3 612,724 - CCNA_00583 0.65 -1.5 612,756 + CCNA_00583 0.67 -1.1 612,762 + CCNA_00583 0.68 -3.0 612,829 - CCNA_00583 0.72 -1.5 612,830 + CCNA_00583 0.73 -0.1 612,841 + CCNA_00583 0.73 -1.5 612,866 - CCNA_00583 0.75 -0.5 612,888 - CCNA_00583 0.77 +0.6 613,032 - CCNA_00583 0.87 -1.5 613,045 + CCNA_00583 0.88 +1.9 613,046 - CCNA_00583 0.88 -0.9 613,094 - -0.3 613,094 - -3.8 613,110 - +3.4 613,111 - -0.4 613,147 + -2.9 613,394 + +1.2 613,394 + -0.4 613,420 + +0.3 613,425 + -1.6 613,436 + CCNA_00585 0.11 +0.4 613,439 - CCNA_00585 0.11 -0.9 613,455 + CCNA_00585 0.12 -0.6 613,464 + CCNA_00585 0.13 +1.2 613,464 + CCNA_00585 0.13 -1.9 613,464 + CCNA_00585 0.13 -0.8 613,464 + CCNA_00585 0.13 +0.9 613,464 + CCNA_00585 0.13 -0.5 613,464 + CCNA_00585 0.13 -2.0 613,472 - CCNA_00585 0.14 +0.9 613,472 - CCNA_00585 0.14 -4.0 613,472 - CCNA_00585 0.14 -1.8 613,472 - CCNA_00585 0.14 -0.1 613,478 + CCNA_00585 0.15 +1.9 613,478 + CCNA_00585 0.15 +0.1 613,486 - CCNA_00585 0.15 -2.0 613,488 + CCNA_00585 0.16 -0.2 613,489 + CCNA_00585 0.16 -1.5 613,489 + CCNA_00585 0.16 -1.3 613,496 - CCNA_00585 0.16 -0.5 613,496 - CCNA_00585 0.16 -1.1 613,512 + CCNA_00585 0.18 +1.9 613,520 - CCNA_00585 0.19 -0.1 613,521 - CCNA_00585 0.19 +2.9 613,590 + CCNA_00585 0.25 -2.3 613,601 + CCNA_00585 0.26 -1.1 613,639 + CCNA_00585 0.30 -2.4 613,639 - CCNA_00585 0.30 -1.4 613,728 - CCNA_00585 0.38 -1.8 613,737 + CCNA_00585 0.39 +0.3 613,782 + CCNA_00585 0.43 -1.0 613,782 + CCNA_00585 0.43 -1.9 613,782 + CCNA_00585 0.43 -0.7 613,880 - CCNA_00585 0.53 -0.7 613,902 - CCNA_00585 0.55 -0.9 613,926 + CCNA_00585 0.57 +0.1 613,966 + CCNA_00585 0.61 -2.1 613,971 + CCNA_00585 0.61 -1.1 613,971 + CCNA_00585 0.61 -2.0 614,029 - CCNA_00585 0.67 -3.5 614,049 + CCNA_00585 0.69 -1.5 614,051 + CCNA_00585 0.69 +0.3 614,051 + CCNA_00585 0.69 -3.7 614,054 - CCNA_00585 0.69 +0.4 614,079 + CCNA_00585 0.71 -2.2 614,079 + CCNA_00585 0.71 -0.5 614,087 - CCNA_00585 0.72 -0.3 614,087 - CCNA_00585 0.72 -2.3 614,091 + CCNA_00585 0.73 -0.1 614,094 - CCNA_00585 0.73 -2.1 614,095 + CCNA_00585 0.73 +0.3 614,096 + CCNA_00585 0.73 -1.3 614,104 - CCNA_00585 0.74 +1.9 614,104 - CCNA_00585 0.74 -1.4 614,113 - CCNA_00585 0.75 -1.5 614,129 + CCNA_00585 0.76 -1.1 614,129 + CCNA_00585 0.76 -0.6 614,129 + CCNA_00585 0.76 -1.9 614,130 - CCNA_00585 0.76 -0.3 614,137 - CCNA_00585 0.77 +0.9 614,140 + CCNA_00585 0.77 -0.9 614,140 + CCNA_00585 0.77 +1.9 614,140 + CCNA_00585 0.77 -0.4 614,140 + CCNA_00585 0.77 -0.9 614,148 - CCNA_00585 0.78 -0.5 614,158 - CCNA_00585 0.79 -0.6 614,158 - CCNA_00585 0.79 -1.7
Or see this region's nucleotide sequence